Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18820 919 / 0 AAA-type ATPase family protein (.1) AT5G45720 811 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 274 / 2e-76 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 269 / 6e-75 AAA-type ATPase family protein (.1) AT4G24790 257 / 3e-72 AAA-type ATPase family protein (.1.2) AT1G21690 70 / 2e-12 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 55 / 2e-07 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT5G27740 49 / 1e-05 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G24290 44 / 0.0005 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007316 [exp] 1783 / 0 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 882 / 0 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10005422 [exp] 847 / 0 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10042401 [exp] 270 / 6e-75 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10033035 [exp] 250 / 6e-70 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10013665 [exp] 245 / 1e-67 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10026270 [exp] 192 / 8e-50 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10019391 [exp] 50 / 6e-06 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 44 / 0.0007 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061700 [exp] 1037 / 0 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 935 / 0 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 296 / 2e-83 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 286 / 4e-80 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 252 / 8e-70 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 246 / 9e-68 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G081200 [exp] 61 / 1e-09 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.019G040000 [exp] 50 / 6e-06 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10029265 pacid=23139910 polypeptide=Lus10029265 locus=Lus10029265.g ID=Lus10029265.BGIv1.0 annot-version=v1.0 ATGACCACCAGTAGGATTCTCAAGGATGCAAATGGAAATGGTGGTGATTTCAGCGACCATCTTCGTAACCACATCCATTTGACCAACTGCATTCACCTCA AGAACCATATGCATAAGCAGCTGAGTCCAATGATGCTAGTTGGTGGTGACAATAGGTCACTAATGAGGGACCTCATTGGTCTTCATAGGTCCAGGTCTTT GAGGGATCCTTCTGTTAGCCCTCCTTCCTGGCAGCATTCGCCTTCAGTTGTCGATTTGCTGCACAGAAAGGGTGAGGGTGATCAGATTCAGGAAGGTAGA AGATCGGTTGGGACCGATCGTAGAAGTAGTAGGAGGTTGTCTGGTGTCCCACCGCGATTTTCGAGTCATCATCATCCAACATCCAAAGTTGTGCCTAATG ATGATGTTAGTGGTAGGAATGTAGGGTTGTTTCTAGATATGATTTCGGGGAATTCGGGGTCCAAAGATAGGAGAAGTAGTAGTAGGCAGCAGAAGTCTAA GCATAGTGAAGAAGGTGTGCATCATATCAAGACTCTTTCTCAGCAACTGAATGAGGTTGCTATGGATAGTGAAGATGTAGCTTCCTCTAATCTCCACCGC AATGGCGGTAGCGTTCGTGCCTCCTATAGTGGCGTTCATCGGGGTAGTAAAAGACGTAAGTTTAAGAGTGGTGCCAGAAGGAGCCGTAAACAAGACCAGT CTGTTGCTTCGAATTGGGTAGTACAAAGTTCGTCAAGGCCAAGAAGGACTAACTTGAATGAGGAAGAAGAAGAGTATGGAGATCAGAATAATGTGACACG AGGTCCTCGAAACGGATGTGGGATTCCGTGGAATTGGTCGAGAATCCATGACAAGGGTAAGATCATTCTTGACAAGGCAGGAAGGAGTTTGTCATGTGGT CTTTCAGAGTCGAGGTTGAGACGAGGCTCGAGCAATTTAGATGATAATGGGGATATGATGCCAATGGCGGCATCTGGTCAATCCAGCTCGTCATCTCGGT CAAATGCAGAAGAAGCGCTGCCTCTACTCGTAGAGACCAGTGGCAATGCTGGTTGGGTGCATGACTATTCCGGTGAGCTCGGTTTGTATGCTGATAATTT ACTCAGAAATAATGACATTGACGATTCCGACCACGCTTCAGAAGCTAGATCCGTTGACCACCGAAGAAGACATCAGAATCTGACACAGAAGTACATGCCT AGACGCTTTAGAGACCTTGTGGGACAGAATCTTGTGTCACAAGCTATCTCCAATGCAGTGATGAGAAGGAAAGTTGGATTGCTTTATGTGTTTTATGGTC CTCACGGTACCGGGAAAACATCGTGTGCACGCATTTTCGCTCGAGCTTTGAATTGCCAACAAGGCGGTGGTCCCATGCCGTGTGGGAGTTGCAACTCCTG CACCGGGAAGAACAGAAACATTCGAGAAATCGGTCCGGTCAGTAATAATTCCGACTTCAAAACCGTTATGGACGATCTTCTCGACCAAAAGATAATGATT GTTTCCCCCTCCAAGTACAAAGTTTTCATCTTTGATGATTGTGATACATTGTCTCATGATTGCTGGAGCGCCATGTCGAAGGTTGTCAATCGAGCTCCTA GGCGTGTAGTTTTTATCCTCGTCAGTTCGAGTCTTGACGTTATACCTCACATAGTCTTATCTAGATGCCAAAAATTCTTTTTCCCCAAGTTGAAAGATAC AGACATTATCGATACATTGCAATGGATCGCATCCAGAGAAGGTGTAGAGATCGATAATGACGCTATGAAGCTTATCGCCTCTCGTTCGGATGGATCGCTA CGAGATGCTGAGATTACTCTTGAGCAACTCAGTCTGCTTGGACAAAAGATTTCTGTGCCACTAGTTCAGGAGCTGGTTGGGCTAATATCTGATGAGAAAT TAGTGGATCTTCTTGACCTAGCACTATCTGCAGATACTGTAAACACTGTCAAGAATCTAAGAGTCATAATGGAGACTTCTGTGGAGCCTTTAGCTCTAAT GTCACAGCTTGCTACAGTTATCACTGATATATTAGCCGGTACGTACGATTTCGCCAGAGAAAGACATAGAAGGAAGTTCTTCCGTCGACAACCAATGTCA AAGGAAGAAATGGAAAAACTGCGTCAAGCGCTGAAAACTCTATCCGAGGCTGAGAAACAACTTAGGATGTCGAACGACAAATTGACGTGGCTAACAGCAG CATTGCTTCAACTTGCACCTGATCAACAGTATTTTCTGCCTAGTTCCTCAAATGAACCCAGTTTTAGTCATAGTCCTCTCACCGGTCGACGAGATATGAC CAAGACAGTTGGACAGCATGCTCTAGAAGATCACCCCGTGGGAACTTCTGTTGATTTCCATGCAAACAGAACGGTGAATGACACTAATGCAGCTCCTCAA AGGTCATCCGGTCGACCTTCTAATGCATGCCAGATGACTGACACGGGGAAAATTCGGATGGGATACGAAGAAATTTGGCTCGAGGTGGTTGAGAAGATTC GGTTTAAGAGTATAAGAGACTTCTTGTACAAGGAAGGGACACTGGTCTCTCTCAGTTTTGGTGCAGCTCCTACAGCGCACTTGCTTTTCAGCTCACAGCT AACAAAATCAAAAGCAGAGAAGTTCACAACATATCTTCTAGAAGCATTCGAGTCAGCTCTCGGCTCGCCAGTCACAATCGAAATCAGAAGCGAACCAACA GCAAACAGGCCGTCTCACACGCCACTTGTTCTCAGAGATCGCGAAACTACTAGAATGGCAAGTAGACCTGCAGACGAGATTGTCGAACTACCAGCTTCGC CTTCACAGCATCAAGCGATTCCACGAAAGCTAACTCAAAGCAAGAGCCTTGTGAGGAGCAAGGTATCCTTAGCTCAAGTGATACAGCAGGGTGAAGGATG TAGCACTGCCAGTACTACTACACAGCCTAGTAGCGGATGGTCGAATCGCAAAGCAGTTTCCATCGCTGAGAAGCTCGAACAAGAAAACTTGAGACTGGAG CCCAGATCAAGAAGCACGCTTTGCTGGAACTCGTCCTCGAGGGTCATGCGCAGGAAGCTGTCTCGTTTGAAGATTAGGGGAAGAAGGCCACAATCACTGC TGAAGCTGATCTCCTGTGGGAAATGTCTGTCTGCTAAACCAAAATCTCCTCCTTAG
AA sequence Show only first row Show all	>Lus10029265 pacid=23139910 polypeptide=Lus10029265 locus=Lus10029265.g ID=Lus10029265.BGIv1.0 annot-version=v1.0 MTTSRILKDANGNGGDFSDHLRNHIHLTNCIHLKNHMHKQLSPMMLVGGDNRSLMRDLIGLHRSRSLRDPSVSPPSWQHSPSVVDLLHRKGEGDQIQEGR RSVGTDRRSSRRLSGVPPRFSSHHHPTSKVVPNDDVSGRNVGLFLDMISGNSGSKDRRSSSRQQKSKHSEEGVHHIKTLSQQLNEVAMDSEDVASSNLHR NGGSVRASYSGVHRGSKRRKFKSGARRSRKQDQSVASNWVVQSSSRPRRTNLNEEEEEYGDQNNVTRGPRNGCGIPWNWSRIHDKGKIILDKAGRSLSCG LSESRLRRGSSNLDDNGDMMPMAASGQSSSSSRSNAEEALPLLVETSGNAGWVHDYSGELGLYADNLLRNNDIDDSDHASEARSVDHRRRHQNLTQKYMP RRFRDLVGQNLVSQAISNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQQGGGPMPCGSCNSCTGKNRNIREIGPVSNNSDFKTVMDDLLDQKIMI VSPSKYKVFIFDDCDTLSHDCWSAMSKVVNRAPRRVVFILVSSSLDVIPHIVLSRCQKFFFPKLKDTDIIDTLQWIASREGVEIDNDAMKLIASRSDGSL RDAEITLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETSVEPLALMSQLATVITDILAGTYDFARERHRRKFFRRQPMS KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYFLPSSSNEPSFSHSPLTGRRDMTKTVGQHALEDHPVGTSVDFHANRTVNDTNAAPQ RSSGRPSNACQMTDTGKIRMGYEEIWLEVVEKIRFKSIRDFLYKEGTLVSLSFGAAPTAHLLFSSQLTKSKAEKFTTYLLEAFESALGSPVTIEIRSEPT ANRPSHTPLVLRDRETTRMASRPADEIVELPASPSQHQAIPRKLTQSKSLVRSKVSLAQVIQQGEGCSTASTTTQPSSGWSNRKAVSIAEKLEQENLRLE PRSRSTLCWNSSSRVMRRKLSRLKIRGRRPQSLLKLISCGKCLSAKPKSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18820			AAA-type ATPase family protein...		Lus10029265 [exp]	0	1
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	1.0	0.8016
AT1G10180			unknown protein		Lus10022896 [exp]	5.7	0.7985
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	28.6	0.7380
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	31.6	0.7770
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	34.3	0.7294
AT4G39630			unknown protein		Lus10035849 [exp]	35.6	0.7560
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	37.0	0.7568
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10007211 [exp]	41.6	0.7495
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	65.1	0.7166
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	69.1	0.7290

Compare expression of checked genes

Lus10029265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.