Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 128 / 6e-37 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 105 / 1e-27 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 103 / 5e-27 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G13330 97 / 5e-25 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G23240 93 / 2e-23 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G33710 93 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G23230 90 / 5e-23 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G51190 92 / 9e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G43410 88 / 3e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 90 / 7e-22 AP2_ERF ERF104 ethylene response factor 104 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016227 [exp] 296 / 6e-103 AT2G44840 134 / 3e-39 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 178 / 1e-56 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 174 / 7e-55 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 174 / 7e-55 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 172 / 4e-54 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 169 / 8e-53 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 164 / 4e-51 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016223 [exp] 139 / 2e-41 AT2G44840 144 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 138 / 9e-41 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 140 / 2e-41 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 135 / 2e-39 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 131 / 2e-38 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 120 / 5e-35 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 121 / 3e-34 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 115 / 1e-31 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 113 / 1e-30 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 107 / 3e-28 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 106 / 7e-28 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 102 / 2e-27 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10029314 pacid=23139983 polypeptide=Lus10029314 locus=Lus10029314.g ID=Lus10029314.BGIv1.0 annot-version=v1.0 ATGTCTAGCGAGAATATTCAAGCCCTTGAATTCATCCGCAGTCAACTTCTGGACGACGATAAAGATTCCAGTCGTCTCAACTCTAATGAGGCGCCGTTTT ACCCTGGCTGCCTTGAGAACGAGAGTTGGAGCGACATTTTGGCCCGACTGGCTGTTGAAGAAAACTCTGCTGCTTCTGTACAGCAACCTGACATTATTGA TATCGACGACGACCACGACGAAGACGAAGAAGATGGGAATGCTAATAAGAAGCCGAAAGTGGCGCCGGCGCCGGCGCCAAATGTTAAGGCGCGTAATTAC TTGGGAGTCAGGAGAAGGCCGTGGGGGAAGTACGCGGCGGAGATTAGGAATCCGAAGCGAAACGGTGCCAGGAATTGGTTGGGCACTTACGAGTGCCCGG AAGATGCGGCTCTGGCTTACGATAGAGCTGCTTTTGAGATGAGGGGAGCTAAGGCTAAACTCAACTTCCCGCATTTGGTGGGGTCTGATTTCGAACCAGT TAGAGTGACTCACAAAAAGCGTGGTTTGCCAAGCCTGCAGCCAACACCATCCACCTCTTCCTCGCTGATGTGCGACTACTCGTCCTACGTGGAAGAGGAC TGGAACCAGTCCAATGCTATTTGGCAGTGA
AA sequence Show only first row Show all	>Lus10029314 pacid=23139983 polypeptide=Lus10029314 locus=Lus10029314.g ID=Lus10029314.BGIv1.0 annot-version=v1.0 MSSENIQALEFIRSQLLDDDKDSSRLNSNEAPFYPGCLENESWSDILARLAVEENSAASVQQPDIIDIDDDHDEDEEDGNANKKPKVAPAPAPNVKARNY LGVRRRPWGKYAAEIRNPKRNGARNWLGTYECPEDAALAYDRAAFEMRGAKAKLNFPHLVGSDFEPVRVTHKKRGLPSLQPTPSTSSSLMCDYSSYVEED WNQSNAIWQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029314 [exp]	0	1
AT1G07020			unknown protein		Lus10026396 [exp]	1.0	0.7732
AT5G52790			CBS domain-containing protein ...		Lus10027528 [exp]	5.5	0.6639
					Lus10022893 [exp]	11.8	0.6517
AT4G35210			Arabidopsis protein of unknown...		Lus10023951 [exp]	15.0	0.6910
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	19.2	0.5975
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	20.9	0.6493
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	28.4	0.5798
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	30.0	0.5533
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	31.0	0.5533
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	31.9	0.5533

Compare expression of checked genes

Lus10029314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.