Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 138 / 6e-41 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 115 / 1e-31 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 108 / 4e-29 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 96 / 3e-25 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23240 96 / 3e-24 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G43410 92 / 6e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07580 94 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 92 / 4e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 92 / 4e-23 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G51190 91 / 1e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016224 [exp] 300 / 6e-105 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029331 [exp] 207 / 8e-68 AT2G44840 147 / 4e-44 ethylene-responsive element binding factor 13 (.1) Lus10016212 [exp] 202 / 9e-66 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10016223 [exp] 171 / 2e-54 AT2G44840 144 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10029319 [exp] 163 / 3e-51 AT2G44840 142 / 6e-43 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 156 / 4e-48 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 152 / 1e-46 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 150 / 1e-45 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 150 / 1e-45 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 142 / 3e-42 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 136 / 1e-40 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 135 / 8e-40 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 122 / 5e-36 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 120 / 1e-33 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 116 / 7e-32 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.014G046900 [exp] 115 / 8e-32 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G081200 [exp] 112 / 2e-30 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 108 / 1e-29 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.001G154100 [exp] 110 / 2e-29 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10029318 pacid=23139818 polypeptide=Lus10029318 locus=Lus10029318.g ID=Lus10029318.BGIv1.0 annot-version=v1.0 ATGTGGGGATATTCTGAAGAGATTGACATCATGGATAGCTTATTCATGGATGATTACTCTTCAGATCCTTCATTCCTTGAGTCCATCCACGACTTCCTCA TCTCCGGCGACTTCGAAAACGACGTCGTCCCCAGTAGTAGTGCCCCTTCACCTTCTTCTACTACTACCAGTACTTCCAGCGACAATCCTCCTACGAACGT CAGCCGCCAGATCTCCGCCGTTCAATCTCCTACTACGCTCAGCTGCCAGATGATCTCAGCCGTTCAACCTCCTACGGAGAAGAAGAAGAGATCGGGGGCG TCCACGTGGCAGTTCAAAGGAGTGAGGAGGCGTCCGTGGGGCAAATACGCTGCCGAGATCAGGGACCCGAAGCGTAACGGTGCTAGGATATGGTTGGGTA CTTACGAGTCTCCCGAAGATGCGGCTCTGGCTTACGATAGAGCCGCTTTCGAGATGTGGGGAGCTAAGGCTAAGCTTAACTTTCCGCATCTGGTTGGGTC GACTAAGTACGAGCCGGTTCGAGTTACAAACGGTAAGAAGCGGGCCGCTGATCAGACCGACAACTGCTCTCCGAAGCCGAAGCGGATCCTCAAATTCCAA ACCTGA
AA sequence Show only first row Show all	>Lus10029318 pacid=23139818 polypeptide=Lus10029318 locus=Lus10029318.g ID=Lus10029318.BGIv1.0 annot-version=v1.0 MWGYSEEIDIMDSLFMDDYSSDPSFLESIHDFLISGDFENDVVPSSSAPSPSSTTTSTSSDNPPTNVSRQISAVQSPTTLSCQMISAVQPPTEKKKRSGA STWQFKGVRRRPWGKYAAEIRDPKRNGARIWLGTYESPEDAALAYDRAAFEMWGAKAKLNFPHLVGSTKYEPVRVTNGKKRAADQTDNCSPKPKRILKFQ T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	0	1
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	1.4	0.9124
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	2.8	0.8802
					Lus10012313 [exp]	3.9	0.9092
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	3.9	0.9280
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10016429 [exp]	6.6	0.8175
AT3G52360			unknown protein		Lus10029348 [exp]	12.2	0.8222
					Lus10011947 [exp]	14.1	0.8422
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	14.7	0.8885
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	14.7	0.8815
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	15.6	0.8919

Compare expression of checked genes

Lus10029318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.