Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 142 / 7e-42 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 120 / 7e-33 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 117 / 6e-32 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 100 / 7e-27 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23240 100 / 5e-26 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G51190 100 / 9e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 97 / 8e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G07580 98 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G43410 95 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 98 / 4e-24 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016212 [exp] 329 / 1e-115 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 219 / 3e-72 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029318 [exp] 210 / 8e-69 AT2G44840 140 / 1e-41 ethylene-responsive element binding factor 13 (.1) Lus10016223 [exp] 175 / 2e-55 AT2G44840 144 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10029319 [exp] 174 / 4e-55 AT2G44840 142 / 6e-43 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 154 / 6e-47 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 154 / 1e-46 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 154 / 1e-46 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 152 / 4e-46 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 144 / 5e-43 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 139 / 2e-41 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 139 / 9e-41 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 124 / 2e-36 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 120 / 5e-33 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.014G046900 [exp] 118 / 8e-33 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G081200 [exp] 119 / 2e-32 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 118 / 2e-32 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 115 / 8e-31 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 108 / 1e-29 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10029331 pacid=23139837 polypeptide=Lus10029331 locus=Lus10029331.g ID=Lus10029331.BGIv1.0 annot-version=v1.0 ATGTGGGGATACTCTGAAGAGACAGACATAATCGACAGCTTACTCATGGATGATTATTCCTCAGATCCTTCATTCCTTGATTCCATCCACCACTTCCTCA TCTCCGGCGACTTCGAAAACGACCCCGTCCCCAGTAGTTCTACCACCAGTTGCAGCGACGATTTTTCGGATCCTGCATTCCTTGATTCCATCCACCACTT CCTCATTTCCGAAAACTTCGACCAAAACGACGTCGTCGTTCTCACTGCTGATCCTTCCGCTACTACTACCAGCAGTAGCAGCTCCGGAAGCCAGCAATCT TCTTCTCCGGCTGTCACCAGCGATCCGACGGAGGAGGATCCATTCCCCGCCGTGCCTATCGAGAAGAAGAGTTCATCAGAGACGTCCACGTGGAGGTTCA AGGGAGTGAGGAGACGTCCGTGGGGCAAATACGCGGCGGAGATAAGGGATCCGAAACGTAACGGCGCCAGGATATGGCTGGGGACTTACGAGACTCCGGA AGACGCGGCTCTAGCTTACGACAGAGCCGCTTTCGAGATGCGGGGAGCTAAGGCTAAGCTCAACTTCCCGCATCTCGCTGGGTCGACCGAGTATGAACCG GTTCGAGTTACCAACGGTAACAAGAAGCGCACCGCTGACCGGACCGATGGCCCTCCGAACCCGAAGCGGAGCAAAGCCTCTGCATAA
AA sequence Show only first row Show all	>Lus10029331 pacid=23139837 polypeptide=Lus10029331 locus=Lus10029331.g ID=Lus10029331.BGIv1.0 annot-version=v1.0 MWGYSEETDIIDSLLMDDYSSDPSFLDSIHHFLISGDFENDPVPSSSTTSCSDDFSDPAFLDSIHHFLISENFDQNDVVVLTADPSATTTSSSSSGSQQS SSPAVTSDPTEEDPFPAVPIEKKSSSETSTWRFKGVRRRPWGKYAAEIRDPKRNGARIWLGTYETPEDAALAYDRAAFEMRGAKAKLNFPHLAGSTEYEP VRVTNGNKKRTADRTDGPPNPKRSKASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016212 [exp]	2.0	0.9142
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	3.0	0.9304
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	4.0	0.9258
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	4.2	0.9250
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	5.1	0.8723
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	9.8	0.8726
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	9.9	0.8928
AT1G54120			unknown protein		Lus10008114 [exp]	10.7	0.8495
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	11.8	0.8746
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	14.1	0.8450

Compare expression of checked genes

Lus10029331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.