Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 144 / 3e-43 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 121 / 7e-34 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 118 / 5e-33 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23240 103 / 2e-27 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT3G23230 101 / 2e-27 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G13330 100 / 3e-26 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G33710 100 / 3e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G43410 96 / 2e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07580 99 / 4e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 97 / 5e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016211 [exp] 295 / 1e-102 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 270 / 4e-93 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 256 / 1e-87 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 252 / 6e-86 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 243 / 3e-82 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10029314 [exp] 187 / 5e-60 AT2G44840 139 / 6e-41 ethylene-responsive element binding factor 13 (.1) Lus10016227 [exp] 181 / 8e-58 AT2G44840 134 / 3e-39 ethylene-responsive element binding factor 13 (.1) Lus10004011 [exp] 165 / 2e-51 AT2G44840 132 / 2e-38 ethylene-responsive element binding factor 13 (.1) Lus10030261 [exp] 158 / 1e-48 AT2G44840 125 / 1e-35 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 164 / 4e-51 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 149 / 1e-45 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 148 / 8e-45 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 146 / 6e-44 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 129 / 1e-38 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 127 / 3e-36 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 127 / 3e-36 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 120 / 2e-33 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 119 / 5e-33 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 112 / 2e-31 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10029333 pacid=23139807 polypeptide=Lus10029333 locus=Lus10029333.g ID=Lus10029333.BGIv1.0 annot-version=v1.0 ATGTCTACCCAGATTCAATCCCTCGAGTCCATCTGCAACCATCTTTTCGGCGACGACGATTCCGAATCGGCACTCTCGAATGCGACTTCATTTTATTCCG AGTGTCAGAGCTTCAGCACGCTCCTCGAGGCCGACAGCTGGACCGACATTTTCTCCCAGCTGGATGATGAAGAAATTACTTCTACTAATTGCAAGCCACT ACCAACAGTAGTGGTGTTGCCGAAGAAGGCGAATTATAAGGGAGTCAGGAGACGGCCGTGGGGGAAGTACGCGGCGGAGATCAGGGATCCAAAGCGGAAC GGGGCGAGGATATGGTTGGGTACTTACGAGTCTCCCGAGGATGCAGCTCTAGCTTACGACAGAGCCGCTTTCCAGATGCGGGGAGCTAAGGCTAAGCTCA ATTTCCCGCATCTGGTGGGGTTTACTGATTACGAACCCGTTAGGGTCACCAACAAAAAACGCTGCTCGCCGGAGTCATCATCCTCATTGTCAACGTTTTC GGGATCGGAAAATGAATCTCCGGAGCCCAAACGAAGGATGAGTTTGCTTGAGTCGTCCTACGTGGAAGATGAGTGGGACCAGTCAAATGCCATTTGGCAG TGA
AA sequence Show only first row Show all	>Lus10029333 pacid=23139807 polypeptide=Lus10029333 locus=Lus10029333.g ID=Lus10029333.BGIv1.0 annot-version=v1.0 MSTQIQSLESICNHLFGDDDSESALSNATSFYSECQSFSTLLEADSWTDIFSQLDDEEITSTNCKPLPTVVVLPKKANYKGVRRRPWGKYAAEIRDPKRN GARIWLGTYESPEDAALAYDRAAFQMRGAKAKLNFPHLVGFTDYEPVRVTNKKRCSPESSSSLSTFSGSENESPEPKRRMSLLESSYVEDEWDQSNAIWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029333 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	3.2	0.9133
					Lus10039759 [exp]	10.4	0.8921
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	11.6	0.9033
					Lus10011995 [exp]	12.0	0.8809
AT1G76070			unknown protein		Lus10021840 [exp]	12.3	0.8623
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	13.1	0.8282
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	13.6	0.8977
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	15.9	0.8889
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	19.0	0.8919
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	20.5	0.8618

Compare expression of checked genes

Lus10029333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.