Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 206 / 2e-65 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 197 / 2e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 192 / 4e-60 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 189 / 2e-59 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 184 / 1e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 179 / 1e-55 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 179 / 1e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 176 / 7e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 172 / 1e-52 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 169 / 1e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016179 [exp] 452 / 8e-163 AT4G03140 228 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 268 / 4e-90 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029370 [exp] 262 / 6e-88 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 257 / 9e-86 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 255 / 5e-85 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 251 / 2e-83 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 249 / 1e-82 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029371 [exp] 244 / 1e-80 AT1G52340 221 / 1e-71 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 243 / 2e-80 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206500 [exp] 256 / 1e-85 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 255 / 7e-85 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 251 / 2e-83 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 248 / 5e-82 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 247 / 6e-82 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 246 / 1e-81 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 246 / 2e-81 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 243 / 2e-80 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 239 / 7e-79 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 236 / 1e-77 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10029368 pacid=23139809 polypeptide=Lus10029368 locus=Lus10029368.g ID=Lus10029368.BGIv1.0 annot-version=v1.0 ATGAAAGGATCCACCATCACTTCCACCCTCCATGAAGCCTTGATCCCCAAGAGGTTACAAGACAAAGTCGTTATCATCACCGGCGGCGCCAGCGGCATCG GCGCCGCCACAGCCACCCTCTTCGCCAAACACGGCGCCAAGGTCATCGTCGCCGACCTCAAACCTCCCACCGCCGACAACAGCCGCAGCGACATTTCCTA CGTCCACTGCGACGTCACCAACGAATCTGACATCGAAAACGCCGTCGACACCGCGGTCTCGACCAACGGCAGGCTGGACATCATGTTCAGCAACGCTGGG ATCATGGAGTCCAGTTACCCCACGATCTCGTCGTTCGACCGCGCCACGTTCAACGCTGTCTTCAACACCAACGTCTACGGCGCCTTCCTGGCGGCGAAGC ACGCCGCCAGGGTGATGGTCCCGCGGAGGCGCGGATCCATCCTGTTCACGGCCAGCGTCGTGACTGCGCAGGTGCACGGGCAGGCGCCTCACGTGTACAC CGCGTCGAAGCACGCGGTGGTGGGGCTGGCGAAGAATCTGGCGGTGGAGATGGGCCCGCACGGGATCCGAGTGAACTGCATCTCGCCGTTCGGGGTGGCG ACCCCGCTGGCAATGGGGCCCTCGGGGATGGACGAAGACGCGTTTAAGGGTGTAATAGATCAGATAGCGAATCTGAAAGGGGCGAGTTTGGAGGCGGAGG ACGTGGCGGAGGCGGCGGTTTATTTGGGGAGCGATGAGGCTAAGTATGTTAGTGGGATGAATCTCGTCATTGATGGAGCCTATGGATTGAAGTGTGCCAC TTGA
AA sequence Show only first row Show all	>Lus10029368 pacid=23139809 polypeptide=Lus10029368 locus=Lus10029368.g ID=Lus10029368.BGIv1.0 annot-version=v1.0 MKGSTITSTLHEALIPKRLQDKVVIITGGASGIGAATATLFAKHGAKVIVADLKPPTADNSRSDISYVHCDVTNESDIENAVDTAVSTNGRLDIMFSNAG IMESSYPTISSFDRATFNAVFNTNVYGAFLAAKHAARVMVPRRRGSILFTASVVTAQVHGQAPHVYTASKHAVVGLAKNLAVEMGPHGIRVNCISPFGVA TPLAMGPSGMDEDAFKGVIDQIANLKGASLEAEDVAEAAVYLGSDEAKYVSGMNLVIDGAYGLKCAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029368 [exp]	0	1
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	1.4	0.9889
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	4.9	0.9851
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	6.9	0.9827
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	7.7	0.9813
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10001574 [exp]	10.2	0.9465
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	10.5	0.9844
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	10.8	0.9802
					Lus10043316 [exp]	13.4	0.9818
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	14.7	0.9707
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	15.7	0.9806

Compare expression of checked genes

Lus10029368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.