Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 216 / 4e-69 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 213 / 3e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 206 / 3e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 206 / 8e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 202 / 1e-64 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G52340 200 / 2e-63 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 198 / 9e-63 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 191 / 3e-60 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 187 / 1e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 182 / 2e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014227 [exp] 281 / 5e-95 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 281 / 6e-95 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021319 [exp] 273 / 1e-91 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 272 / 1e-91 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 270 / 8e-91 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 270 / 1e-90 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 268 / 5e-90 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 268 / 5e-90 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 266 / 2e-89 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206800 [exp] 298 / 9e-102 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 291 / 4e-99 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 288 / 8e-98 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 286 / 3e-97 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 276 / 2e-93 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 272 / 1e-91 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 271 / 5e-91 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 262 / 1e-87 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 251 / 2e-83 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 248 / 4e-82 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10029369 pacid=23139958 polypeptide=Lus10029369 locus=Lus10029369.g ID=Lus10029369.BGIv1.0 annot-version=v1.0 ATGGCCGCCACATCATCCGCAATGAATTTTGCCAAGAGGCTACAAGGCAAGGTGGCACTGATCACTGGAGGAGCGAGCGGGATCGGAGAGAACACAGCGA AGCTCTTCGCCAAGCACGGGGCCAAAGTCATAATCGCTGACGTCCAAGATGACCTAGGCCACTCCCTAGCTAAAACCATTGGCCAATCCTCCACTTACGT CCACTGCAACGTGGCACACGAGCCCGACGTCCAACACGCAGTAGACACTGCCGTTTCACTCCACGGCAAACTGGACATCATGTACAACAACGCCGGAATC ACAGGTAACTACACCCCGACGATATCCTCCTTAACCCGCGACGATTACAACAGAGTCCTCGACATTAACCTCTACGGCGCCATGCTAGGAGCCAAGCACG CCACGCGCGTGATGACACGCTCCGGCAACGGCGGATGCATACTGTTCACCGCCAGCGTGGCGGCGGTGAGTTTCGGGGAAGTGCCGCACCCTTACTCAGC GTCCAAATCAGCTATCGTGGGTCTGACGAAGAATCTGTGCGTCGAGCTGGGACAGTACGGGATAAGAGTGAACTGCGTTTCGCCAGGGGCGATACCAACT CCGACGGCGGCGAAGGCGATGGGTTCTGACGACTTGAGGGTTGTTCGGGAGGCGGTGGCTAAAGTGGCGAACTTGAAAGGAGTGGTGGTCGACGCTGATG ACGTGGCGAATGCAGTTTTGTATTTGGGGAGTGACGAGGCGAGGTACATTAGTGGGTTGAACGTCGTTATTGACGGCGGATTGAGTTTGAGGAGCTTGAC TCTTGGCCAGTGA
AA sequence Show only first row Show all	>Lus10029369 pacid=23139958 polypeptide=Lus10029369 locus=Lus10029369.g ID=Lus10029369.BGIv1.0 annot-version=v1.0 MAATSSAMNFAKRLQGKVALITGGASGIGENTAKLFAKHGAKVIIADVQDDLGHSLAKTIGQSSTYVHCNVAHEPDVQHAVDTAVSLHGKLDIMYNNAGI TGNYTPTISSLTRDDYNRVLDINLYGAMLGAKHATRVMTRSGNGGCILFTASVAAVSFGEVPHPYSASKSAIVGLTKNLCVELGQYGIRVNCVSPGAIPT PTAAKAMGSDDLRVVREAVAKVANLKGVVVDADDVANAVLYLGSDEARYISGLNVVIDGGLSLRSLTLGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029369 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	1.0	0.9863
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	2.2	0.9814
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	3.5	0.9830
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	8.6	0.9842
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	12.2	0.9784
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	12.3	0.9821
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	13.5	0.9799
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	13.9	0.9807
AT3G62650			unknown protein		Lus10017613 [exp]	14.1	0.9774
					Lus10015339 [exp]	15.5	0.9768

Compare expression of checked genes

Lus10029369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.