Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03140 180 / 6e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 172 / 4e-52 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 171 / 1e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 168 / 1e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 167 / 2e-50 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 161 / 2e-48 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 160 / 3e-48 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 150 / 4e-44 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 147 / 8e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 145 / 3e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016177 [exp] 410 / 3e-146 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016176 [exp] 306 / 3e-105 AT3G51680 224 / 2e-72 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029371 [exp] 303 / 1e-103 AT1G52340 221 / 1e-71 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016175 [exp] 298 / 4e-102 AT3G51680 214 / 1e-68 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 258 / 3e-86 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 254 / 2e-84 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016179 [exp] 248 / 2e-82 AT4G03140 228 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 248 / 2e-82 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 233 / 3e-76 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206700 [exp] 242 / 7e-80 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 241 / 3e-79 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 239 / 6e-79 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 239 / 7e-79 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 239 / 8e-79 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 229 / 2e-74 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 228 / 2e-74 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 214 / 5e-69 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 212 / 3e-68 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 210 / 2e-67 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10029370 pacid=23139787 polypeptide=Lus10029370 locus=Lus10029370.g ID=Lus10029370.BGIv1.0 annot-version=v1.0 ATGGCGAAAAGATTGCAAGGCAAAGTTGCCCTGATCACCGGCGGCGCCAGAGGCCTCGGAGCCGCCGCGGCCAGGCTGTTCGCCCAACACGGCGCCAAAG TCTTGATCGCCGACATCCGGCCTGAACTGGGCCGGTCCGTGTCCCGTGAAATCGAATCCGAATCGGGGCAACCGGTTTCCTACGTCGAGTGTGACGTCAC CAGCGACTCGGACATGCAAAACGCAGTCGACACCGCCGTTTCGACCCATGGGAAGCTCGACATCATGTACAACAGTGCCGGGGCGATCGGAGCGAAAAGC TCGGACAACCTGCCACAAGGTAATGAATTGGGTTTTATATCGTCGGTCAACCAGCAAGTGTTCCGTAACGTGTTTGATGTCAACGTGTACGGATCCTTAC TGGCCGGAAAACACGCAGCTAGGGTGATGGTCCAGCAGAAGAGCGGGACCATCCTGTTCACCAGCAGCTTTGTGACCGCCAGCCACGGGATGGCCCCATA CATTTATGCGGCGTCCAAGCACGCCGTGGTTGGGGTCGCGAAAAACCTGGCTGTGGAGTTGGGCCAGTTTGGGATCCGGGTGAACTGCGTTTCGCCGTAT GGGGTGGCGACTCCTATGGGTATGGAAGGGATGGGGATCGACAAGGAGGCGTACGAGGCGATCTTCTCGCGTATGGGGAATTTGAAAGGGGTGGTGTGTA AGGATAAGGATATCGCGGAAGCCGCGTTGAACTTGGTGAGCGATGAGTCGAGGTATGTTAGTGGAGTTGATCTAGTGGTTGATGGTGGCTATAGCTTGAA GAGCGCTTGA
AA sequence Show only first row Show all	>Lus10029370 pacid=23139787 polypeptide=Lus10029370 locus=Lus10029370.g ID=Lus10029370.BGIv1.0 annot-version=v1.0 MAKRLQGKVALITGGARGLGAAAARLFAQHGAKVLIADIRPELGRSVSREIESESGQPVSYVECDVTSDSDMQNAVDTAVSTHGKLDIMYNSAGAIGAKS SDNLPQGNELGFISSVNQQVFRNVFDVNVYGSLLAGKHAARVMVQQKSGTILFTSSFVTASHGMAPYIYAASKHAVVGVAKNLAVELGQFGIRVNCVSPY GVATPMGMEGMGIDKEAYEAIFSRMGNLKGVVCKDKDIAEAALNLVSDESRYVSGVDLVVDGGYSLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	0	1
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	6.6	0.8792
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	7.3	0.9186
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	9.2	0.8850
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	9.9	0.8985
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	13.6	0.8980
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	15.0	0.8971
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	19.9	0.8734
					Lus10005395 [exp]	21.7	0.8924
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	24.6	0.8888
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	28.0	0.8938

Compare expression of checked genes

Lus10029370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.