Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 204 / 8e-65 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 202 / 4e-64 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 193 / 3e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 187 / 1e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 183 / 3e-57 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 182 / 8e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 177 / 9e-55 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 177 / 1e-54 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 174 / 2e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 174 / 3e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016176 [exp] 446 / 2e-160 AT3G51680 224 / 2e-72 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016175 [exp] 405 / 2e-144 AT3G51680 214 / 1e-68 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029370 [exp] 331 / 5e-115 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 320 / 8e-111 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 273 / 4e-92 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 266 / 2e-89 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 251 / 1e-83 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 251 / 2e-83 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 251 / 2e-83 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206500 [exp] 266 / 2e-89 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 260 / 6e-87 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 258 / 3e-86 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 256 / 3e-85 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 247 / 8e-82 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 245 / 5e-81 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 243 / 3e-80 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 239 / 5e-79 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 238 / 3e-78 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 236 / 1e-77 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10029371 pacid=23139903 polypeptide=Lus10029371 locus=Lus10029371.g ID=Lus10029371.BGIv1.0 annot-version=v1.0 ATGGCCAAGAGATTGCAAGGAAAAGTAGTGCTGATCACCGGCGGCGCCCGAGGCCTCGGTGCTGCAGCGGCAAGGCTCTTCTCCCAACACGGTGCCAAAG TCCTCATAGCCGACATCCGCTCTGAATTGGGCCGATCCGTGGCGAAGGAAATCGAATCGGAGTCGGGCCACCCCGTTTCATACATCCAGTGTGACGTCAC GAGCGACGTGGACATGGGAAACGCGGTAGACGCCGCCGTTTCGACCCACGGGAGGCTCGATATCATGTACAACAACGCTGGGATAGTCGGGGAGAAGTTT GACCCGCCCGAACTGGACATATCGGCGGTAGATCCCACGGTCTTCCGGCAGGTGTTCGATGTGAACGTGTACGGATCGTTCTTGGCGGCTAAGCACGCTG CCAGGGTGATGGTCCCGCAGAAGAGCGGGACCATACTGCTCACAGCAAGTGCGGTGACTGTGAGCAACGGGACATGCCCCCATGTTTACACTGCTTCGAA GCACGCGGTAGTGGGGCTGACGAAGAATTTGTGCGTGGAGCTGGGAAAATTCGGGATTCGGGTGAACTGCATTTCTCCGTCTGCGGTGGCTACTCCGGCG GCCTTGGAGGTCACGGGAATGCGCGACGCGGCAACGCTCGAGGCGGCTTACGCGGCAAAGTCGAACTTGAAAGGGAAGGCATTGAAGGCGGAGGATGTCG CGGAGGCTGCGTTGACTCTCGTGAGCGATGAGTCTGGGTATATTAGCGGGGTGGATCTTGTGGTTGACGGCGGTAGTAATTGCTTAATGGGCGTGTGA
AA sequence Show only first row Show all	>Lus10029371 pacid=23139903 polypeptide=Lus10029371 locus=Lus10029371.g ID=Lus10029371.BGIv1.0 annot-version=v1.0 MAKRLQGKVVLITGGARGLGAAAARLFSQHGAKVLIADIRSELGRSVAKEIESESGHPVSYIQCDVTSDVDMGNAVDAAVSTHGRLDIMYNNAGIVGEKF DPPELDISAVDPTVFRQVFDVNVYGSFLAAKHAARVMVPQKSGTILLTASAVTVSNGTCPHVYTASKHAVVGLTKNLCVELGKFGIRVNCISPSAVATPA ALEVTGMRDAATLEAAYAAKSNLKGKALKAEDVAEAALTLVSDESGYISGVDLVVDGGSNCLMGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10029371 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	1.7	0.8983
AT1G54120			unknown protein		Lus10008114 [exp]	3.7	0.8647
AT1G27385			unknown protein		Lus10015781 [exp]	4.9	0.8908
AT5G12900			unknown protein		Lus10031249 [exp]	5.7	0.8374
AT5G43060			Granulin repeat cysteine prote...		Lus10027877 [exp]	11.9	0.8799
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	20.5	0.8720
AT3G21710			unknown protein		Lus10039666 [exp]	22.2	0.8710
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	23.0	0.8643
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	24.1	0.8627
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	24.4	0.8496

Compare expression of checked genes

Lus10029371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.