Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 390 / 6e-137 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 237 / 9e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 230 / 2e-74 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G03140 231 / 4e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 228 / 6e-74 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 229 / 2e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 226 / 4e-73 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 213 / 6e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 212 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 204 / 2e-64 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022756 [exp] 572 / 0 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 397 / 3e-139 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 260 / 4e-86 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 258 / 3e-85 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 257 / 5e-85 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 257 / 8e-85 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 256 / 2e-84 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 255 / 4e-84 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 252 / 4e-83 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105900 [exp] 422 / 9e-150 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 422 / 2e-149 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 411 / 3e-145 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 273 / 2e-91 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 270 / 6e-90 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 268 / 2e-89 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 260 / 5e-86 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 258 / 2e-85 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 253 / 2e-83 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 251 / 1e-82 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10029438 pacid=23139823 polypeptide=Lus10029438 locus=Lus10029438.g ID=Lus10029438.BGIv1.0 annot-version=v1.0 ATGACTGCACAAGTTATTCCGGCGGAGACAACCATCCAACAGCCGGGCATTCATGTTTTGTCCGGCCGAGACCAACAATCCCATCTCCCTCCCCGAAGAT TGGAAGGGAAGATTGCGGTAGTGACAGGTGGCGCACGGGGAATCGGGGAAGCGACTGCGCGTCTTTTCGCAAAGCTTGGAGCCAAAGTTGTGATTGCCGA CGTGGACGACAAACTCGGCAACGCGTTGGCCGACTCTTTATCATTGTCGTTGACAACAATGAATCATTCGCCTCCTTCTGTATCGTACGTGCACTGCGAT GTCAGCTCTGAATCGGATGTCGAAAACTTGATAAGCTCCACAGTGTCACGATACGGGAGGTTAGACATACTCTTCAACAACGCCGGTGTCTTGGGGTCTC AGACGAAGAAAAAAAAGAGCATCATCAACTTTGATGCGAGTGAGTTTGACCGGGTCATGCGTGTCAACGTCCTGGGAATGGCGCTAGGGATCAAGCACGC AGCTCGTGCGATGATCCCACGTGGCGGTGGGTGCATAGTGTCCACCGCCAGCGTCGCGGGGGTAATGGGAGGGATGGGGCCCCATGCTTACACGGCGTCA AAGCACGCTATAGTGGGGCTGACAAAGAACGCAGCGTGCGAGTTGGGAAAGTATGGGATCCGTGTCAATTGCATTTCTCCGTTCGGGGTCGCCACTTCGA TGTTGGTTAACGCATGGCGCGACGACGAGAATGCAAATGACGACGAGGATAAGATCATGTTACCCTGCGAGGAGGAGGTGGAGGAGATCGAGGAGTTTGT GAGAGGGTTGGGGAATTTGAAAGGAGGAGCAACGCTAAAGGCCAAAGATATAGCGGAGGCAGCGGTGTATTTGGTTAGCGACGAGTCTAAGTACGTTAGT GGGCATAACCTAGTGGTTGATGGCGGTGTAACAACTTCGAGGAATTGTGTTGGGTTATAA
AA sequence Show only first row Show all	>Lus10029438 pacid=23139823 polypeptide=Lus10029438 locus=Lus10029438.g ID=Lus10029438.BGIv1.0 annot-version=v1.0 MTAQVIPAETTIQQPGIHVLSGRDQQSHLPPRRLEGKIAVVTGGARGIGEATARLFAKLGAKVVIADVDDKLGNALADSLSLSLTTMNHSPPSVSYVHCD VSSESDVENLISSTVSRYGRLDILFNNAGVLGSQTKKKKSIINFDASEFDRVMRVNVLGMALGIKHAARAMIPRGGGCIVSTASVAGVMGGMGPHAYTAS KHAIVGLTKNAACELGKYGIRVNCISPFGVATSMLVNAWRDDENANDDEDKIMLPCEEEVEEIEEFVRGLGNLKGGATLKAKDIAEAAVYLVSDESKYVS GHNLVVDGGVTTSRNCVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029438 [exp]	0	1
AT5G50175			unknown protein		Lus10019469 [exp]	1.4	0.8962
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	2.4	0.8656
AT5G50175			unknown protein		Lus10043318 [exp]	2.8	0.8870
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041685 [exp]	3.0	0.8853
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	5.7	0.8737
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10022590 [exp]	5.9	0.8677
AT2G47485			unknown protein		Lus10028487 [exp]	7.5	0.8624
AT1G64300			Protein kinase family protein ...		Lus10033941 [exp]	26.2	0.8213
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	33.5	0.7866
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10004620 [exp]	55.9	0.8348

Compare expression of checked genes

Lus10029438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.