Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 134 / 1e-34 BAT1 bidirectional amino acid transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039616 [exp] 273 / 5e-87 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2) Lus10028561 [exp] 209 / 3e-62 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2) Lus10040039 [exp] 128 / 5e-36 ND / Lus10034628 [exp] 138 / 2e-35 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10012425 [exp] 127 / 5e-34 ND / Lus10002726 [exp] 121 / 7e-32 ND 37 / 0.008 Lus10040059 [exp] 116 / 2e-30 ND / Lus10000699 [exp] 116 / 5e-30 ND / Lus10002163 [exp] 113 / 5e-30 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100700 [exp] 249 / 8e-78 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2) Potri.002G078100 [exp] 216 / 3e-65 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 203 / 6e-61 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2) Potri.010G119100 [exp] 135 / 2e-35 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.008G125100 [exp] 131 / 1e-33 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 113 / 8e-28 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10029533 pacid=23149362 polypeptide=Lus10029533 locus=Lus10029533.g ID=Lus10029533.BGIv1.0 annot-version=v1.0 ATGGAGCACCACCAAGTTCCAGAACGCTGGGAGATTGAAGAAATGGATTCTGGTGAGAAGAGGCTCAACGAGTTGGGTTACAAGCAAGCGCTCAGAAGAC AAATGACTTTGTTCAAAACTCTTGCCATATCATTTTCAACCATGACTCTCTTTACTGGGATCACACCCTTGTATGGTTCCAGCCTTATGTATGCAGGTCC TGCAACTCTGGTGTGGGGATGGGTTGTTATCTCCTTCTTCACCTGGTTTGTTGGCATTGCCATGGCTGAGATTTGCTCCTCTTTTCCGACTACTGGTTCT CTTTATTTCTGGGCAGCCCATTTAGCTGGTCCCGAATGGGGACCTTTTACATCCTGGTGTTGCGCCTGGCTTGAGAACATTGGACTCGTTGCTGGCATAG GTACTCAGTGCATCCATGGAAGGTATCAGAACTCTGCAGGATCGATTGTGCTGTTCTTTGTGATATGGGGTCCATTCTTCTTTGGTGGCCTCTCTATAAC TACTAGTGCAACTAGACTGGTTTATGCATTATCAAGAGACAAAGGCATTCCATTCTCATCAGTATGGCGTAAAATTCACCCGAAGCATAAAGTTCCCTCG AACTCGGTGTGGTGCACTGCCATATGCATTCTGCTACGTTTGGACAGTCTGACCGGACCGAAAATCGGTATGGCAGACCACTCGGACGGAAATCTGCTAT GTTTGGGCAGTCTGATCGGACCGAAAATCGGTCCGTCCGGTTTGGGTCGAGGATTGGCATGCCATAGATTCATAGAGCAAGGGAGCACTTGGGATGAGAT GATTGCGAAATGTTCTGCCACTAACAAAGAGAACAAAGCTGCTCAAGATGTGTACCATACTTCTAGTTCAAAGTCGTTCAACAAAAAGAAGAAAGAAATG AAGGAAATTAAGGCCTTCATGGATGATCCAGACACTGCTCTAGGATTTGATCAAAATGATGTAGTTGGTCAAAGTTATCCCAGTGGAGGGAAACCAGATC GAGTACGTGCTCTAGGCCATGGGGCGAATCCAAATAAATTCCAGAAGAAATTTAAGAGAAGTGGCGGTACTTCTTCCTCTGCTCCTGCTGATCCAATACA CAATCCAACTTTCTTCAAGCAGGTCGCATTAGAGATGTTGAAGTTTGTATCCTGA
AA sequence Show only first row Show all	>Lus10029533 pacid=23149362 polypeptide=Lus10029533 locus=Lus10029533.g ID=Lus10029533.BGIv1.0 annot-version=v1.0 MEHHQVPERWEIEEMDSGEKRLNELGYKQALRRQMTLFKTLAISFSTMTLFTGITPLYGSSLMYAGPATLVWGWVVISFFTWFVGIAMAEICSSFPTTGS LYFWAAHLAGPEWGPFTSWCCAWLENIGLVAGIGTQCIHGRYQNSAGSIVLFFVIWGPFFFGGLSITTSATRLVYALSRDKGIPFSSVWRKIHPKHKVPS NSVWCTAICILLRLDSLTGPKIGMADHSDGNLLCLGSLIGPKIGPSGLGRGLACHRFIEQGSTWDEMIAKCSATNKENKAAQDVYHTSSSKSFNKKKKEM KEIKAFMDDPDTALGFDQNDVVGQSYPSGGKPDRVRALGHGANPNKFQKKFKRSGGTSSSAPADPIHNPTFFKQVALEMLKFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10010992 [exp]	4.0	0.9501
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	5.6	0.9659
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	6.7	0.9548
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	9.8	0.9638
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	13.1	0.9643
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012609 [exp]	18.8	0.9379
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	19.2	0.9588
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	21.9	0.9579
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	23.9	0.9421
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	25.7	0.9248

Compare expression of checked genes

Lus10029533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.