Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63100 661 / 0 GRAS GRAS family transcription factor (.1) AT1G66350 244 / 5e-73 GRAS RGL1 RGA-like 1 (.1) AT2G01570 239 / 3e-70 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G50420 231 / 5e-68 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G14920 228 / 2e-66 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G54220 226 / 1e-64 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G17490 222 / 1e-64 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 221 / 5e-64 GRAS RGL2 RGA-like 2 (.1) AT5G41920 203 / 1e-58 GRAS GRAS family transcription factor (.1) AT1G55580 192 / 3e-54 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006322 [exp] 991 / 0 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10041540 [exp] 278 / 7e-84 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 280 / 2e-83 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10017626 [exp] 251 / 1e-74 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 249 / 8e-74 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022418 [exp] 229 / 4e-68 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10033912 [exp] 230 / 4e-67 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10003540 [exp] 230 / 4e-67 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 224 / 1e-63 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122400 [exp] 917 / 0 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.001G109400 [exp] 898 / 0 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.001G326000 [exp] 265 / 7e-79 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 247 / 4e-73 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 245 / 2e-72 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 244 / 8e-72 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 239 / 8e-70 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.002G036100 [exp] 231 / 5e-68 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 226 / 3e-66 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.015G091200 [exp] 222 / 2e-64 AT1G66350 256 / 4e-79 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10029592 pacid=23152079 polypeptide=Lus10029592 locus=Lus10029592.g ID=Lus10029592.BGIv1.0 annot-version=v1.0 ATGTTGGCAGGTTGTTCTTCTAGTTCCACACTGTTGTCACCTAGGCATAGATTAAGGAGTGAGTCAGCAGCAGGAGGAGCAGGAGGAGCACAGTTTCCAG CTTGTCAGTTCCAGTTACCTTCAATGAGCACACAGAGATTGGACTTGCCATCATGCACATTCCCCCGCAAAGATCAATCGTCGAGATCACAATCCATTAG GCCAGTTGGTGTTTCAGTTGACAACAGGCCACTAGACTCCAAGACCAGCAGGTGTTCTTCTCTCAAGCAGAACATCCGGCTTCCACCATTGGCGACAGCA ACCGTCAAGGATGACTTTTGGGATCAGGGAAGGAATCAGCAGAAGCAGAAGAAGAGATTTGCAGAGCAGGATGATGATGATGAGTCCTACATCAACAGGA CTAAGAGGAAGAAATGCAGCAATGACCATGGTAAGTCTGCTAATTATGGCCATGAAGGTGGACTAGGCCAGTTTGGTTCTGGGAAGTTTTGGTTTCAACC AAATTTTCAGGTTCCTTTCTCTTTGACATGTTCAGGAGAAGATGAAAGGGTTTGCTATGTCCCCAGTGAAGTGATTTCACCACCTAGGCCACTGTCAAAC AATCCATGGGTTGATTCAGTCATAACTCAGATTACTGACTTAGGGGGGAAAGACGGAGAGGGAAGCCAAAGAAGACCAGGGAAAGAAGCTTCAGGTTCTA GCAGTACTTCATCAGACAGTGACAGTTTGGAGCTCAGGCTAAGTGAGAGGAATCCTGAGGAGCATGAAGTTGGTAATGGCTCAAGAAATCCTCATCATCC ACAACACAATGCTGCAACAATGGAGGCTGCCGAGGAGGAGGATCAGGACGGAGAGGTTAGAGGTTTGGAGCTGGTTAGCTTGATCACATCATGTGTCGAA GCAATCAGGTCAAGGAACGTGGCGATGGTCAACCATTTCATATCCAAGTTGGGAGAACTTGCTTCTCCAAAGGGAAGTCCTATCAGCAGGCTGAGTGCTT ATTACACCGAGGCTTTGGCTCTCAGGGTTACAAGGATATGGCCTCAAGTATTCCATCTCGCCACTCCGAGGGATGTCGACCGGGTTGAAGATGATACAGG GACTGCATTGAGGATTATGAATCAGGTGAGTCCGATTCCGAAGTTCATTCACTTCACTGCCAATGAGATGTTGCTGAGGGCATTTGAAGGGAAAGACAAG GTTCACATCATTGACTTTGACATCAAACAAGGGCTTCAGTGGCCTAGCTTCTTTCAGAGTTTGGCATCAAGATGTAACCCTCCTAGCCATGTTAGAATCA CCGGTGTAGGCGAATCGAAGCAAGATCTGAACGAGACAGGAGACCGGCTATCTGGGTTCGCAGAAGCGTTGAACTTGCCCTTCGAGTTCCATCCGGTTGT GGATCGATTGGAAGACGTGAGGCTATGGATGCTTCACGTGAAGGAAGGAGAGAGTGTTGCAGTAAATTGCCTATTCCAGATGCACAAGATACTCTATGAC ACCAATGGAGTGGCACTGAGGGATTTCATAGGACTAATCAAGAGTACAAACCCAGTAACGGTCATCATGGCAGAGCAAGAAGCTGAGCACAATGGATCCA GCTTGGAATCCAGAGTCTGTAATTCTCTGAGGTACTATTCTGCTGTGTTTGACTCCATTGACTCTGGTCTTCTCCCATTGGAGAGCCCAGTCAGGATCAA AATGGAGGAGATGTTTGCACGGGAGATCAGGAATGTAGTTTCCTGTGAAGGGATTGACAGGGTCGAGAGGCACGAGAAGTTTGAGAAATGGAAGAGCTTG ATGGAGCAAGGTGGATTTCATAGCGTGGGAATCACCGAGAGGGAGTTTCTTCAGGGTCAGATGTTGTTGAAGATGTACTCTTGTGGTGGAAACTATGGGG TTATGAAGCAAGGAGGAGGAGAAGCATTGGCCCTCACACTTACTTGGTTAGGAGAACCACTCTACACAGTCTCGGCATGGATACCGGTGGACATTGCAGG AAGCTCGTCGTCATTTTCGCAGCCTTAG
AA sequence Show only first row Show all	>Lus10029592 pacid=23152079 polypeptide=Lus10029592 locus=Lus10029592.g ID=Lus10029592.BGIv1.0 annot-version=v1.0 MLAGCSSSSTLLSPRHRLRSESAAGGAGGAQFPACQFQLPSMSTQRLDLPSCTFPRKDQSSRSQSIRPVGVSVDNRPLDSKTSRCSSLKQNIRLPPLATA TVKDDFWDQGRNQQKQKKRFAEQDDDDESYINRTKRKKCSNDHGKSANYGHEGGLGQFGSGKFWFQPNFQVPFSLTCSGEDERVCYVPSEVISPPRPLSN NPWVDSVITQITDLGGKDGEGSQRRPGKEASGSSSTSSDSDSLELRLSERNPEEHEVGNGSRNPHHPQHNAATMEAAEEEDQDGEVRGLELVSLITSCVE AIRSRNVAMVNHFISKLGELASPKGSPISRLSAYYTEALALRVTRIWPQVFHLATPRDVDRVEDDTGTALRIMNQVSPIPKFIHFTANEMLLRAFEGKDK VHIIDFDIKQGLQWPSFFQSLASRCNPPSHVRITGVGESKQDLNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEGESVAVNCLFQMHKILYD TNGVALRDFIGLIKSTNPVTVIMAEQEAEHNGSSLESRVCNSLRYYSAVFDSIDSGLLPLESPVRIKMEEMFAREIRNVVSCEGIDRVERHEKFEKWKSL MEQGGFHSVGITEREFLQGQMLLKMYSCGGNYGVMKQGGGEALALTLTWLGEPLYTVSAWIPVDIAGSSSSFSQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	0	1
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	1.0	0.9817
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10033417 [exp]	2.2	0.9378
AT3G12870			unknown protein		Lus10031776 [exp]	4.5	0.9490
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	5.7	0.9482
AT1G32860			Glycosyl hydrolase superfamily...		Lus10008277 [exp]	6.6	0.9011
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	9.4	0.9379
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	10.2	0.9290
AT4G28230			unknown protein		Lus10018539 [exp]	11.3	0.9172
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	11.7	0.9134
AT3G12870			unknown protein		Lus10031198 [exp]	12.1	0.9313

Compare expression of checked genes

Lus10029592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.