Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G29000 257 / 4e-81 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 234 / 6e-72 GARP Homeodomain-like superfamily protein (.1.2) AT4G28610 228 / 1e-69 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT2G20400 176 / 2e-50 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G01060 163 / 2e-46 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 160 / 1e-44 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 159 / 1e-43 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G13640 132 / 9e-35 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT5G18240 132 / 3e-34 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G24120 130 / 5e-34 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032778 [exp] 694 / 0 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10008197 [exp] 424 / 1e-145 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10024938 [exp] 277 / 6e-88 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 275 / 3e-87 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10022885 [exp] 269 / 8e-85 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10027958 [exp] 224 / 9e-69 AT5G29000 132 / 7e-35 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10035705 [exp] 162 / 3e-44 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 154 / 6e-43 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 156 / 3e-42 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020900 [exp] 330 / 8e-109 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.013G048000 [exp] 330 / 1e-108 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.002G257800 [exp] 284 / 3e-90 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.006G191000 [exp] 173 / 4e-49 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 167 / 4e-47 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 169 / 6e-47 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 162 / 6e-45 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 160 / 8e-45 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 157 / 5e-44 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 144 / 2e-38 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029607 pacid=23151953 polypeptide=Lus10029607 locus=Lus10029607.g ID=Lus10029607.BGIv1.0 annot-version=v1.0 ATGAAGTTCTTACCCGGTGTATGTTCGAATCTCGCTCAGAACTTGAAATGCTATTCAGGCTCTTCGACCATCCCGGTTCCATTATTGCATGCTGCAGCTG TAGGTTTACAAAAATCATTAACTGTTCTCTCTGCTGCATTTAATCAGGGTTGGTTTCTGGTGGATCCTGTTGTGATGTCTTCATCGTTCCGAGTTCTTCA TACTCCTCCCGAAGAGAAGTACCCGAAACTACCTGATACTTTTCAGACGAGGGAGCTAATGAGAAACCCTATACCACAACTGGCAGTTCCAGTGGGTGGT TCCACCTCTACCGGTGCTGTTGACTACTTGTTATCCTCGTCTGCGATTTTGCCACATTATCAAGGTTCTCAGTTAACTTCTCAGTCATCAAATGGCGGAG GAAGCTTTCCAACATCATTGCTTGCTCCACATCCAGAAGTGCTGCAATCCACAACGTTGCCTGTTTACTCTGAAGATAAGAGTAGTGGTAGTTGGTCCAT CAATCCACTTGCAGAATTTCTTGATATTCCGGAGGATGTTGCGTCTGAAGAAAATGTCAAGAGAACAGATTGGCAGTGGGCAGATCAGTGGATCTCAGTC GATGATAACCTAGACGTAGACTGGAATGAAATTCTTAGTGAAGTTAATAATGCCACCGAGACAAACCAAAAGGTGCCACAACCGTCTTCCACTAACTTGC TGCCACAACCTTCAGTACAACAAGCACAAGTAAATCCTCAGCAAGAACCTGCACTTAGCGGAGAATTAACTGTTGCCGCAACCCCACTGCCCTCAGCACC AGCAAACAAAGCCAGGATGCGATGGACACCAGAACTTCACGAGGCTTTTGTGGAAGCTGTCAATCAGCTTGGTGGCAGCGAAAGAGCTACTCCGAAGGGT GTCTTGAAGCTAATGAAAGTTGAAGGCTTGACGATTTATAATGTCAAAAGCCACTTGCAGAAGTACAGAACAGCCAGGTGTAAACCAGAGCCATCTGAAG GATCTTCTGAGAAAAATTTGGGCTCCATTGATGAAATGAAATCTCTGGACTTAAAAACAAGCATGGGGATAACGGAAGCTTTAAGATTGCAAATGGAAGT TCAGAAGCGACTACATGAACAGCTTGAGATTCAGCGAAACTTACAGTTACGAATTGAAGAACAAGGGAGGTGCCTGCAGATGATGTTTGAGAAGCAAAAG AAGATGGAAGAGGAAAAGACTGAGCTTCCTTCCTCGTCTTCCCCTGTGGACGATAAATTAGGACCATCTGATGTCGAGGGAACGAACAGTCCAGGAAATA AGACGAGCGATTCCGGTAAGGCAAGCTCTCATGAAGCCACCAAGAAACAGAAATTAGCAGGAGGTGGAAACAGCAAGGATACAGCATGCGTAAGAGATGA CACTGCATCGAGCCAATCGCAGGGGAAACGACCAAGGACAGATTAA
AA sequence Show only first row Show all	>Lus10029607 pacid=23151953 polypeptide=Lus10029607 locus=Lus10029607.g ID=Lus10029607.BGIv1.0 annot-version=v1.0 MKFLPGVCSNLAQNLKCYSGSSTIPVPLLHAAAVGLQKSLTVLSAAFNQGWFLVDPVVMSSSFRVLHTPPEEKYPKLPDTFQTRELMRNPIPQLAVPVGG STSTGAVDYLLSSSAILPHYQGSQLTSQSSNGGGSFPTSLLAPHPEVLQSTTLPVYSEDKSSGSWSINPLAEFLDIPEDVASEENVKRTDWQWADQWISV DDNLDVDWNEILSEVNNATETNQKVPQPSSTNLLPQPSVQQAQVNPQQEPALSGELTVAATPLPSAPANKARMRWTPELHEAFVEAVNQLGGSERATPKG VLKLMKVEGLTIYNVKSHLQKYRTARCKPEPSEGSSEKNLGSIDEMKSLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRCLQMMFEKQK KMEEEKTELPSSSSPVDDKLGPSDVEGTNSPGNKTSDSGKASSHEATKKQKLAGGGNSKDTACVRDDTASSQSQGKRPRTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10029607 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	10.5	0.8247
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	12.6	0.7935
AT4G24130			Protein of unknown function, D...		Lus10001674 [exp]	16.1	0.8031
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10027567 [exp]	18.7	0.7770
AT1G05675			UDP-Glycosyltransferase superf...		Lus10024118 [exp]	26.9	0.7910
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	31.7	0.7415
					Lus10039764 [exp]	32.3	0.7556
AT1G52490			unknown protein		Lus10022939 [exp]	34.1	0.7065
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	48.5	0.7353
AT1G52490			unknown protein		Lus10022937 [exp]	58.2	0.7051

Compare expression of checked genes

Lus10029607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.