Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22150 963 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 942 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT4G08620 931 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT3G51895 699 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT3G15990 666 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT4G02700 649 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 645 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G10180 618 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 603 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT5G19600 550 / 0 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041111 [exp] 1106 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 1094 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 669 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10025766 [exp] 662 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 659 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10039364 [exp] 654 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10016806 [exp] 648 / 0 AT5G10180 889 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10034603 [exp] 636 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10019389 [exp] 613 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G167300 [exp] 1053 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 1033 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G213500 [exp] 699 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 694 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 693 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092400 [exp] 669 / 0 AT1G77990 826 / 0.0 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) Potri.008G156600 [exp] 667 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 665 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.003G056200 [exp] 659 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 655 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10029616 pacid=23152004 polypeptide=Lus10029616 locus=Lus10029616.g ID=Lus10029616.BGIv1.0 annot-version=v1.0 ATGGTTAATAATAATCCAACCGAAGAGGAGGAGATTGAGACCAAAGAGATTGATGCCGGAAGCCATGGTGGGTCAGGAAATAATGCACCATATGTTCACA AAGTTGGAGTTGTTCCCAGACAGAAGCTGCTGGAAGAATTCAAAGCCAGGGTCAAAGAAACATTCTTTGCTGATGATCCTTTACGTTCCTTCAAGGACCA ATCAAGGTCCAGAAAGTTCGTCCTCGGGATTCGAGCCGTGTTCCCAATTCTTGATTGGGGAAGAAGCTACAACCTCACTAAGTTGAGAGGGGATGTCATA GCTGGCCTTACCATTGCCAGCCTTTGCATTCCTCAGGACATTGGGTATGCAAAGCTTGCAAATTTGGACCCACAGTATGGATTATATTCCAGCTTTGTGC CGCCGCTGATATATGCCATAATGGGTAGCTCAAGAGATATAGCTATAGGACCAGTAGCTGTGGTGTCTCTTCTGTTGGGGACTCTGCTTGAGAACGAAAT TGATTCTGCTAAAAATCCAACAGACTACCGGAGACTTGCTTTTACAGCTACGTTCTTCGCTGGAGTCACACAAGTATGCCTTGGATTCCTCAGGCTGGGG TTTTTGATCGACTTCTTGTCACATGCTGCTATTGTTGGTTTCATGGGCGGTGCTGCCATCACAATTGCCCTCCAACAGCTTAAGGGGTTTCTTGGTATCA AACACTTCACCAAGAAGTCAGACCTCATTTCAGTGATTAAATCAGTAGTTCATGCGGCCCATCACGGTTGGAATTGGCAGACAATGCTTATAGGAGCCAG TTTCTTATGTTTCCTTCTTTTCGCCAAGTTCATTGGAAAGAAGAACAAGAAGCTATTCTGGGTACCTGCAATTGCTCCTTTGATATCTGTTATTCTCTCA ACCTTCTTCGTATACATAACACGGGCAGATAAGGAAGGCGTCCAAACTGTCATGGACATCAAGCAAGGAATAAACCCATCTTCAGTGCACAAAATCTTCT TCACTGGGAAATATCTTGTCAAAGGTTTTAAGATTGGCGTTGTGGCTGGAATGATCGCTTTGACAGAAGCGGTAGCAATTGGAAGGACGTTTGCTTCGAT GAAGGACTACCAAATAGATGGAAACAAAGAAATGGTGGCCATGGGAACTATGAATGTTATTGGCTCAATGACTTCTTGTTATGTAGCAACAGGTTCGTTT TCCAGATCAGCGGTGAACTACATGGCGGGTTGTCAAACAGCAGTATCCAACATCGTCATGTCAGTAGTTGTGCTCCTGACATTATTATTCATCACACCTT TGTTCAAGTACACACCGAACGCGATCCTGGCAGCCATCATCATTTCAGCGGTTATCGGGCTGATCGACTACGAGGCAGCGCTTTTGATATGGAAGATTGA CAAATTCGACTTTGTTGCTTGCATGGGAGCCTTCTTCGGTGTGGTATTCATATCTGTCGAAATCGGCCTCCTGATCGCGGTAACAATTTCGTTTGCGAAA ATTCTGCTACAAGTGACGAGACCAAGGACAGCAATACTGGGGAAGTTGCCAAGGACTACTGTGTACAGAAACATACAGCAGTATCCCGAAGCAACTAAAA TTCCAGGAGTTCTGATGGTTAGAGTAGATTCCGCCATTTACTTCTCTAACTCCAACTATGTCAAGGAAAGGATATTAAGATGGTTGATGGATGAAGAAGA ACGCGTACAACTAACAGGGGAAGCAACAGTTCAGTCTCTGATAGTAGAAATGTCTCCTGTAACAGACATAGACACGAGCGGCATCCATGCGTTCGAGGAG TTGTACAGGAGTCTGAACAAGCGACATATTCAGCTGATTCTGGCAAACCCAGGGCCAGTGGTGATGGAGAAGCTTCATGCTTCTGAACTGGTGAATTTGA TAGGAGAGGATAACATCTTCCTCACTGTGGCGGATGCAATCGCCTCTTGCTATCCGAAACTGGTCCAACAAGTTTAA
AA sequence Show only first row Show all	>Lus10029616 pacid=23152004 polypeptide=Lus10029616 locus=Lus10029616.g ID=Lus10029616.BGIv1.0 annot-version=v1.0 MVNNNPTEEEEIETKEIDAGSHGGSGNNAPYVHKVGVVPRQKLLEEFKARVKETFFADDPLRSFKDQSRSRKFVLGIRAVFPILDWGRSYNLTKLRGDVI AGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAIMGSSRDIAIGPVAVVSLLLGTLLENEIDSAKNPTDYRRLAFTATFFAGVTQVCLGFLRLG FLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKHFTKKSDLISVIKSVVHAAHHGWNWQTMLIGASFLCFLLFAKFIGKKNKKLFWVPAIAPLISVILS TFFVYITRADKEGVQTVMDIKQGINPSSVHKIFFTGKYLVKGFKIGVVAGMIALTEAVAIGRTFASMKDYQIDGNKEMVAMGTMNVIGSMTSCYVATGSF SRSAVNYMAGCQTAVSNIVMSVVVLLTLLFITPLFKYTPNAILAAIIISAVIGLIDYEAALLIWKIDKFDFVACMGAFFGVVFISVEIGLLIAVTISFAK ILLQVTRPRTAILGKLPRTTVYRNIQQYPEATKIPGVLMVRVDSAIYFSNSNYVKERILRWLMDEEERVQLTGEATVQSLIVEMSPVTDIDTSGIHAFEE LYRSLNKRHIQLILANPGPVVMEKLHASELVNLIGEDNIFLTVADAIASCYPKLVQQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	0	1
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	1.0	0.9443
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	3.0	0.8714
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	4.9	0.8713
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	5.2	0.8536
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10037164 [exp]	5.5	0.8520
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	5.7	0.8801
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	5.9	0.8692
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	7.3	0.8641
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	7.5	0.8345
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	10.2	0.8557

Compare expression of checked genes

Lus10029616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.