Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 447 / 2e-133 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 436 / 2e-129 transmembrane receptors;ATP binding (.1.2) AT1G27180 433 / 2e-127 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G14080 380 / 8e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 388 / 9e-111 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 375 / 1e-108 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 374 / 5e-108 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 353 / 1e-101 TAO1 target of AVRB operation1 (.1) AT4G16950 346 / 3e-98 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035674 [exp] 1131 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 1084 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 1082 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 1060 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004115 [exp] 1016 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10020238 [exp] 1002 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023272 [exp] 926 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 918 / 0 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 909 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088500 [exp] 553 / 3e-172 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030700 [exp] 528 / 2e-160 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 513 / 2e-156 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.012G053200 [exp] 473 / 4e-143 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T005501 [exp] 466 / 2e-142 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 463 / 1e-141 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 466 / 4e-141 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T002200 [exp] 451 / 7e-139 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 456 / 1e-138 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 448 / 2e-136 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10029628 pacid=23152036 polypeptide=Lus10029628 locus=Lus10029628.g ID=Lus10029628.BGIv1.0 annot-version=v1.0 ATGGACGAAGTGCTGCTCAAGTGCTCCACTGAAGGAACAACAGTCTCCAATGCTTTTCCAGAATCACAAACATCAGCTGCAGAACGGCAATCTGTCGCCA GTACTTTGGAGTACGAGGTCTTCTTGAGCTTTAGAGGGTCTGATGTCCGCAAAAGCTTTGCGGACTTTCTCTACAGCTATTTGGTCCGTTCCAAAATCCG CACCTTTAGGGACGAGGAAGAGCTTCGGAAGGGAGAGAATATTGCACCTTCTCTCGTCCAGGCTATCACGGAATCGAAGATTTACATCCCAATTTTATCA AAGAACTATGCTTCTAGCAAATGGTGCCTCCAGGAACTAGCTAAGATGGTTGAGTGTTGCAGGAAAGGGAAGGGACAAATCATATTGCCCGTTTTCTATT TTGTAGACCCCAGAGATGTGCGGCATCAAGCGGGTCCATACGAGAAGGCATTTGAACTGCATAGTAAGAAACATGGCCCCATAATTGTACAAGAATGGAG GACAGCTCTCCAAGAAGTTGGACAAATGAAAGGATGGCATGTTACCGAAATAGACGGTCAGGGAGCTGTTATAGATCATGTATTTTCTACGGTCGAGTTG CATCTGAGGAGTAACTACACTTTAGTGACTGATGAGCTGGTTGGGATTGATTCTCATGTGCGAGAAGTGACGAGATTGTTGAACTTAGACTCTAGAGATG CGAGAATTGTTGGGATTCAAGGCATTGGCGGCATGGGTAAAACTACTATAGCCAAGGCAGTCTATGACGATATCTGCACAAGCTTCGACCGTTGCTGTTT CTTAGAAAATATACGAGAAGTATTGTCGAGGAGTGATGGCATTATGTCTTTACAGAATAAGTTCATCTCTAGCATTTTGAGGGATGAAGTTCAGGTTAAA GATCCTAGCGAAGGGGTCAACATGATTAGAGAGAGAGTCTGCAAATATAAACTCTTGGTTGTTCTTGATGATGTAGACGATAAGTTTGAGTTTGATCAGA TATTGGGAAAATTAGGTCACTTCTACTCGGAAAGTAGATTCATCATCACAACAAGAGACAAAAGAGTTTTAGAGCTCCTTCAAGAATACAAGTTGTATGA ACCGGAAGAAATGAGTTATGATCATTCTCTCCAACTTTTTAGCAAACATGCTTTTCGTATGGATTACCCTCCTGGAGATTATGCTGCTCTATGTGATGAT TTCGTAAAAGTTGCATCAAGGCTTCCTTTGGCTCTTAAGGTCATAGGATCACTCCTGTTTTGTAGAGAGAAACAGTTCTGGGAAGTAAAGTTGATGGAGC TGAAAAATTTACCAGCTGCCACTAGCAATAAGGTGCAGCAGAGATTGAAGATTAGCTTCAATGAGTTGACCCCTAATGAAAAACAGATCTTTCTTGATAT AGCCTGCTTTTTTATTGGAGAGGATAAAGAATCGCCCGTTCATATGTGGAGTGATTGTAAAGTTTTTCCGGAAACTGGGATAAGTACTCTTGTTCTTAGA TCCTTAATAAAAATTGATGAGGAAAATCGATTCTGGATGCATGATCTTCTTAGAGACCTTGGGAGAGCTATTGTTATTGAGGAAGATGTTAAAAATCCCT GCAAGCGCAGCAGGATTTGGTCCAATGGAGATGCTTGGAAAATATTGAAAAACGTAAAGGGAGCTGATCAAGTGGAAATGCTCAGGATTGACATGAGACA TGGTGACAGAAATCTTAAGCTCACAGCCAAAGCATTTGAAAAGCTGGCAGGGTTAAGGTATCTAGACCTGGCATTTTTCACGCTTACTAGGGACTTCGGT AGGATTCTTCCAGATATATCGTTGCGAAAAATGAATCTGTGTGGTTGTTGGTCAGTTGAGGAGTTGGATGCAAGTAAATGCACAGAGTTGATTAAGGTTG TAAATTTTGGGAAATTGGAAAAGTTACGGGAGCTGAACTTGTTTGGTTGCAAGTCAACTACGGAGTTGTTTGATTTGTCCGGTCTCGTGAGCTTAGATGG TTTAAATTTGGAGGGATGCACGGAGTTGATTAAGGTCACAAGTTTCGAGAAACTGGAGATGTTACGAAAATTGAACATGCTTGGTTGCAAGTCTATAAGG GAGTTGCCAGATATGTCGTGTCTCAAGAACCTGCATGATTTAAACTTGGAGGGCTGCGCAAAGTTGATTAAGGTTACATGTTTTGGGAAATTGGAGAAGT TACGGAAGCTGAACTTGTTTGGTTGCAAGTCTATTAGGGAGTTGCCAGATCTGTCCGGCCTCGTAAGCTTGAATGATTTGAATTTGGAGGGATGCACGAA GTTGGTTAAGATCACAAGTTACCAGAAATTGGAGATGCTACGAAAGTTGAACATGGCTGGTTGCGAGTCTATTAAGGAGTTGTCAAATATGTCTGATCTC AAGAACCTGCAGGAGTTAAACATGGAGGGATGCATAAAGTTGAGTAAAGTTAGAAGTTTTGAAAAATTGGAGACGTTACGAAAGTTGAACATGTCTGGTT GCGAGTCTATTAAGGAGTTTCCTGATATGTCTGGTCTCAAGAACCTGCATGATTTAAACTTGGAGGGATGCACAAAGTTGATTGAGGTTACAAGTTTTGA GAAATTGGAAAAGTTACGGAAGTTGAACATGTCTGGTTGCAAGTCTATTAAGGAGTTGCCAGATATGTCCGGTCTCATGAGCATAGATGATTTAAATTTT GAGGGATGCACAGAGTTGGTTAAGGTCACAAATTTTGAAAAAATGGAGATGTTACAGAAGTTGAACATGTCTGGTTGCAAGTCTATTAAGGAGTTGCCAG ATCTATCGCGTCTCAAGAACCTACATGTTTTAAACTTGGAAGGATGCACAGAGTTGATTAAGGTTACAAGTTTCGGGAGATTGGAGATGTTACAGAAGTT GAAGATGTCTGGTTGTCAGTCTATTAAGGAGTTGCCAGATATGTCCGGTCTCATGAGCATAGATGATTTAAATTTTGAGGGATGCACAGAGTTGGTTAAG GTCACAAATTTTGAAAAAATGGAGATGTTACAGAAGTTGAACATGTCTGGTTGCAAGTCTATTAAGGAGTTGCCAGATCTATCGCGTCTCAAGAACCTAC ATGTTTTAAACTTGGAAGGATGCACAGAGTTGATTAAGGTTACAAGTTTCGGGAGATTGGAGATGTTACAGAAGTTGAAGATGTCTGGTTGTCAGTCTAT TAAGGAGTTGCCAGATATGTCCGGTCTCATGAGCATAGATGATTTAAATTTTGAGGGATGCACAGAGTTGGTTAAGGTCACAAATTTTGAAAAAATGGAG ATGTTACAGAAGTTGAACATGTCTGGTTGCAAGTCTATTAAGGAGTTGCCAGATCTATCGCGTCTCAAGAACCTACATGTTTTAAACTTGGAAGGATGCA CAGAGTTGATTAAGGTTACAAGTTTCGGGAGATTGGAGATGTTACAGAAGTTGAAGATGTCTGGTTGTCAGTCTATTAAGGAGTTGCCAGATATGTCCGG TCTCATGAGCATAGATGATTTAAATTTTGAGGGATGCACAGAGTTGGTTAAGGTCACAAATTTTGAAAAAATGGAGATGTTACAGAAGTTGAACATGTCT GGTTGCAAGTCTATTAAGGAGTTGCCAGATCTATCGCGTCTCAAGAACCTACATGTTTTAAACTTGGAAGGATGCACAGAGTTGATTAAGGTTACAAGTT TCGGGAGATTGGAGATGTTACAGAAGTTGAAGATGTCTGGTTGTCAGTCTATTAAGGAGTTGCCAGATATGTCCGGTCTCATGAGCATAGATGATTTAAA TTTTGAGGGATGCACAGAGTTGGTTAAGGTCACAAATTTTGAAAAAATGGAGATGTTACAGAAGTTGAACATGTCTGGTTGCAAGTCTATTAAGGAGTTG CCAGATCTATCGCGTCTCAAGAACCTACATGTTTTAAACTTGGAAGGATGCACAGAGTTGATTAAGGTTACAAGTTTCGGGAGATTGGAGATGTTACAGA AGTTGAAGATGTCTGGTTGTCAGTCTATTAAGGAGTTGCCAGATATGTCCGGTCTCATGAGCATAGATGATTTAAATTTTGAGGGATGCACAGAGTTGGT TAAGGTCACAAATTTTGAAAAAATGGAGATGTTACAGAAGTTGAACATGTCTGGTTGCAAGTCTATTAAGGAGTTGCCAGATCTATCGCGTCTCAAGAAC CTACATGTTTTAAACTTGGAAGGATGCACAGAGTTGATTAAGGTTACAAGTTTCGGGAGATTGGAGATGTTACAGAAGTTGAAGATGTCTGGTTGTCAGT CTATTAAGGAGTTGCCAGATATGTCCGGTCTCATGAGCCGTGTGGAGCGCGGCGGTGAAACTCAATAA
AA sequence Show only first row Show all	>Lus10029628 pacid=23152036 polypeptide=Lus10029628 locus=Lus10029628.g ID=Lus10029628.BGIv1.0 annot-version=v1.0 MDEVLLKCSTEGTTVSNAFPESQTSAAERQSVASTLEYEVFLSFRGSDVRKSFADFLYSYLVRSKIRTFRDEEELRKGENIAPSLVQAITESKIYIPILS KNYASSKWCLQELAKMVECCRKGKGQIILPVFYFVDPRDVRHQAGPYEKAFELHSKKHGPIIVQEWRTALQEVGQMKGWHVTEIDGQGAVIDHVFSTVEL HLRSNYTLVTDELVGIDSHVREVTRLLNLDSRDARIVGIQGIGGMGKTTIAKAVYDDICTSFDRCCFLENIREVLSRSDGIMSLQNKFISSILRDEVQVK DPSEGVNMIRERVCKYKLLVVLDDVDDKFEFDQILGKLGHFYSESRFIITTRDKRVLELLQEYKLYEPEEMSYDHSLQLFSKHAFRMDYPPGDYAALCDD FVKVASRLPLALKVIGSLLFCREKQFWEVKLMELKNLPAATSNKVQQRLKISFNELTPNEKQIFLDIACFFIGEDKESPVHMWSDCKVFPETGISTLVLR SLIKIDEENRFWMHDLLRDLGRAIVIEEDVKNPCKRSRIWSNGDAWKILKNVKGADQVEMLRIDMRHGDRNLKLTAKAFEKLAGLRYLDLAFFTLTRDFG RILPDISLRKMNLCGCWSVEELDASKCTELIKVVNFGKLEKLRELNLFGCKSTTELFDLSGLVSLDGLNLEGCTELIKVTSFEKLEMLRKLNMLGCKSIR ELPDMSCLKNLHDLNLEGCAKLIKVTCFGKLEKLRKLNLFGCKSIRELPDLSGLVSLNDLNLEGCTKLVKITSYQKLEMLRKLNMAGCESIKELSNMSDL KNLQELNMEGCIKLSKVRSFEKLETLRKLNMSGCESIKEFPDMSGLKNLHDLNLEGCTKLIEVTSFEKLEKLRKLNMSGCKSIKELPDMSGLMSIDDLNF EGCTELVKVTNFEKMEMLQKLNMSGCKSIKELPDLSRLKNLHVLNLEGCTELIKVTSFGRLEMLQKLKMSGCQSIKELPDMSGLMSIDDLNFEGCTELVK VTNFEKMEMLQKLNMSGCKSIKELPDLSRLKNLHVLNLEGCTELIKVTSFGRLEMLQKLKMSGCQSIKELPDMSGLMSIDDLNFEGCTELVKVTNFEKME MLQKLNMSGCKSIKELPDLSRLKNLHVLNLEGCTELIKVTSFGRLEMLQKLKMSGCQSIKELPDMSGLMSIDDLNFEGCTELVKVTNFEKMEMLQKLNMS GCKSIKELPDLSRLKNLHVLNLEGCTELIKVTSFGRLEMLQKLKMSGCQSIKELPDMSGLMSIDDLNFEGCTELVKVTNFEKMEMLQKLNMSGCKSIKEL PDLSRLKNLHVLNLEGCTELIKVTSFGRLEMLQKLKMSGCQSIKELPDMSGLMSIDDLNFEGCTELVKVTNFEKMEMLQKLNMSGCKSIKELPDLSRLKN LHVLNLEGCTELIKVTSFGRLEMLQKLKMSGCQSIKELPDMSGLMSRVERGGETQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10029628 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	8.8	0.9110
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10003821 [exp]	12.3	0.9248
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	13.0	0.9170
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	17.9	0.9206
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	20.3	0.9244
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	24.7	0.8927
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	31.9	0.9162
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	34.5	0.9004
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	35.5	0.9068
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	36.3	0.9089

Compare expression of checked genes

Lus10029628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.