Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77610 504 / 1e-177 EamA-like transporter family protein (.1) AT1G21870 500 / 3e-176 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 157 / 2e-43 Nucleotide-sugar transporter family protein (.1) AT3G11320 154 / 1e-42 Nucleotide-sugar transporter family protein (.1) AT5G04160 146 / 2e-39 Nucleotide-sugar transporter family protein (.1) AT3G10290 143 / 7e-38 Nucleotide-sugar transporter family protein (.1) AT1G12500 142 / 1e-37 Nucleotide-sugar transporter family protein (.1) AT3G17430 99 / 3e-22 Nucleotide-sugar transporter family protein (.1) AT5G11230 96 / 3e-21 Nucleotide-sugar transporter family protein (.1) AT2G25520 95 / 4e-21 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042700 [exp] 555 / 0 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10025645 [exp] 504 / 6e-178 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10018189 [exp] 406 / 1e-140 AT1G77610 417 / 1e-148 EamA-like transporter family protein (.1) Lus10028255 [exp] 157 / 1e-43 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 157 / 2e-43 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 156 / 4e-43 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 151 / 2e-41 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 138 / 7e-37 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 135 / 3e-35 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084500 [exp] 516 / 0 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 513 / 0 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.008G063400 [exp] 156 / 3e-43 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 153 / 3e-42 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 153 / 3e-42 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 154 / 8e-42 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 147 / 4e-40 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 147 / 8e-40 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 146 / 1e-39 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 145 / 7e-39 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10029663 pacid=23152113 polypeptide=Lus10029663 locus=Lus10029663.g ID=Lus10029663.BGIv1.0 annot-version=v1.0 ATGGATGACAAGAGTCAGTGGAGCGTCTTCAGATCTTTGCTCGCCATTGTTCAGTGGTGGGGCTTCAACGTTACCGTGATTATCATGAACAAATGGATCT TCCAGAAATTGGACTTCAAGTTCCCACTCTCCGTATCCTGTGTCCACTTCATATGCTCGTCAATTGGAGCTTATATAGCAATCAAGGTGCTGAAAATCAA ACCCCTCATAGTGGTTGACCCTGAGGATTTATGGCGAAGAATATTCCCAATGTCTTTTGTGTTCTGCATAAACATTGTACTGGGCAATGTGAGCTTGCGC TACATTCCAGTTTCGTTTATGCAAACTATCAAGTCATTTACTCCTGCAACAACAGTTATTTTGCAGTGGTTGATTTGGAGGAAATACTTCGACTGGCGCA TTTGGGCTTCATTGGTACCTATCGTTGGAGGAATACTCCTCACGTCCATAACAGAGCTCAGTTTCAATGTGTTTGGGTTTTCTGCTGCCCTGCTTGGCTG TTTGGCAACTTCCACAAAGACTATCCTTGCAGAATCTTTACTGCACGGTTACAAATTTGATAGTTCTAGGATTGTGTTCACACCATGGCGAATTTTTAAT GCATTTTGTTTACTCTTTTGCAATCCTCCTGAATCATGGCCATATGCAGTAATTGGAATATTTTTAAACAGACTAAATGCCAGCAATGGTGGTGATTTTA ACAATATCAATATACCTAAATTGGACTTCAAGTTCCCACTCTCCGTATCCTGTGTCCACTTCATATGCTCGTCAATTGGAGCTTATATAGCAATCAAGGT GCTGAAAATCAAACCCCTCATAGTGGTTGACCCTGAGGATTTATGGCGAAGAATATTCCCAATGTCTTTTGTGTTCTGCATAAACATTGTACTGGGCAAT GTGAGCTTGCGCTACATTCCAGTTTCGTTTATGCAAACTATCAAGTCATTTACTCCTGCAACAACAGTTATTTTGCAGTGGTTGATTTGGAGGAAATACT TCGACTGGCGCATTTGGGCTTCATTGGTACCTATCGTTGGAGGAATACTCCTCACGTCCATAACAGAGCTCAGTTTCAATGTGTTTGGGTTTTCTGCTGC CCTGCTTGGCTGTTTGGCAACTTCCACAAAGACTATCCTTGCAGAATCTTTACTGCACGGTTACAAATTTGATAGCATAAATACAGTGTACTACATGGCT CCTTTCGCAACCATGATCCTGGGAATCCCAGCAATGCTGCTAGAAGGAAATGGGGTTTTGGAATGGTTTCAGACCCACGAGACTATATACTCTTCACTTG TCATCATTTTACTCTCTGGGGTGCTAGCCTTCTGTCTAAACTTCTCCATCTTTTATGTGATTCATTCAACAACGGCTGTCACGTTCAATGTTGCTGGAAA CCTTAAGGTTGCAGTAGCTGTGTTAGTTTCATGGATGATATTCAGGAACCCAATCTCAGCTATGAATGCTGTGGGATGTGCCATCACACTTGTAGGGTGT ACATTCTACGGATACGTAAGACATCTGCTATCGCAACAGCCGCCACCTCCTGGAACTCCTCGAACGCCCCGGACTCCGAGAAGCATGATGGAGTTGCTGC CACTCGTAAATGAGAAATTAGATGATAAGGTTTGA
AA sequence Show only first row Show all	>Lus10029663 pacid=23152113 polypeptide=Lus10029663 locus=Lus10029663.g ID=Lus10029663.BGIv1.0 annot-version=v1.0 MDDKSQWSVFRSLLAIVQWWGFNVTVIIMNKWIFQKLDFKFPLSVSCVHFICSSIGAYIAIKVLKIKPLIVVDPEDLWRRIFPMSFVFCINIVLGNVSLR YIPVSFMQTIKSFTPATTVILQWLIWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFSAALLGCLATSTKTILAESLLHGYKFDSSRIVFTPWRIFN AFCLLFCNPPESWPYAVIGIFLNRLNASNGGDFNNINIPKLDFKFPLSVSCVHFICSSIGAYIAIKVLKIKPLIVVDPEDLWRRIFPMSFVFCINIVLGN VSLRYIPVSFMQTIKSFTPATTVILQWLIWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFSAALLGCLATSTKTILAESLLHGYKFDSINTVYYMA PFATMILGIPAMLLEGNGVLEWFQTHETIYSSLVIILLSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWMIFRNPISAMNAVGCAITLVGC TFYGYVRHLLSQQPPPPGTPRTPRTPRSMMELLPLVNEKLDDKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	0	1
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	2.2	0.8629
AT4G37820			unknown protein		Lus10019253 [exp]	2.8	0.8743
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	3.0	0.8577
AT1G04200			unknown protein		Lus10006619 [exp]	3.0	0.8750
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	4.0	0.8470
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	4.9	0.8580
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10021717 [exp]	5.3	0.8613
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	5.8	0.8466
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	10.2	0.8484
AT1G04200			unknown protein		Lus10039377 [exp]	10.6	0.8367

Compare expression of checked genes

Lus10029663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.