Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21700 602 / 0 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT4G34430 147 / 2e-36 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT2G47620 110 / 3e-25 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT2G33610 100 / 3e-22 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT3G07740 58 / 1e-08 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 46 / 6e-05 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT5G17300 42 / 0.0009 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042734 [exp] 1179 / 0 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10040472 [exp] 166 / 2e-42 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10023583 [exp] 164 / 6e-42 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 142 / 6e-35 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 142 / 1e-34 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10016043 [exp] 132 / 2e-32 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 133 / 4e-32 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 117 / 2e-27 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 117 / 3e-27 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080600 [exp] 771 / 0 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 760 / 0 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 160 / 1e-40 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 152 / 4e-38 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.015G100400 [exp] 118 / 1e-27 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 83 / 2e-16 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.014G166300 [exp] 53 / 6e-07 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.006G017300 [exp] 52 / 1e-06 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 50 / 6e-06 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.012G038300 [exp] 44 / 0.0003 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029695 pacid=23151973 polypeptide=Lus10029695 locus=Lus10029695.g ID=Lus10029695.BGIv1.0 annot-version=v1.0 ATGCAGGCTTCCCCTTCTTTCCCTTCCTCTGACGGTAGAGGAAAATGGAAGAGGCGGAAGCGCGAATCCCAGATTTCCCGCAGAATCAAGCCCGAGGATT CCGACGACGACAACAATGACGAAGACGACGAGGGCTCCGAGGACCAACCTAACAACGCTGCTGCAGCTGGTGGCAATTCTTCTCAGTACGCTCCGTTTCC CGATCCCGTCGAGGTGCTCGCCGACGGAGGGGTTCGAATCTGTGGCTTCCCTCCTGTCGCTAGGGGCTCCGTCGAACGACCACATGCTTGGGCTTCGGCT CGGTGTGGGAGGATGGCGGCGTTGTCTGCTGTCCCGGCGGAGGGGGATCAGGATAGGAACGACAGTGGGAATTCGGCGGCGTCGTTTGTGGTGACGCCTC CTCAGATTATGGAAGGGAGAGGGGTCGTTAAACGGTTTGGGAGTGAAGTTCTCGTGGTTCCTATGCATTCAGATTGGTTTGCACCTGCGACTGTACATCG ACTGGAGAGGCAAGTGGTTCCCCACTTTTTCTCAGGAAAATCAACTGATCATACACCGGAGAAGTATATGGACTGTAGGAATCATATTGTTGCTAAATAC ATGGAGAACCCCAAGAAGCGGGTAACAGTATCAGATTGTCAAGGATTGGTACCTGGCATTGGCGACGAAGAATTGTCTCGGATTGTTAGGTTTCTGGATC ATTGGGGGATTATTAATTATTGTGCGGCTGCACCAAGTCGTGAATCTTGGAATAGTAGTTCCTATTTGAGGGATGACGTTAATGGTGAGGTTCAGGTGCC GTCAGCTGCTTTAAAGTCTATTGACAGTTTAATCAAATTTGACAAGCCTAAGTGTGGGCTGAAGGCGGATGAGATTTATTCATCAATCTCATGTCACGAT AATCTCTCCGACCTGGACAACAGAATTCGAGAGCGATTGTCTGAAAATTGTTGCAATTACTGTGGTCATCCGCTTCTCAACCTCTACTATCAGTCACAAA AAGATGTTGACATCCTACTATGCTGTGAATGCTTCCATGATGGGAGATTTGTCATTGGTCATTCAAGCTTAGATTTTGTCAAGCTGGATTCAACAAAACA TTATGGCGATGGAGATGCAGAAAGCTGGACTGATCAAGAAACATTCCGTCTGCTCGAGGCAATGGAAATCTATAATGAGAACTGGAATGAAATTGCGGAG CATGTTAACAGCAAGTCAAAAGCACAATGCATCCTGCATTTTTTGCGTTTGCCGATGGAGGATGGCCGGTTGGAGAACATTGAAGTTCCAATGGTTCCCA ATTCTTCGAGTGTATCAAACGGAAACGGAGATGGTGCCAGCGGGCTTCATTCAAGTTCAAATGGTTCCTGCTCCCAAGATAATGATTTAGAAATCAGGCT CCCTTTTGAGAACTCTGAGAATCCTGTAATGTCATTGGTTGCATTTCTTGCCTCTGCTATTGGTCCCAGGGTTGCTGCTGCATGTGCGCATGCATCTTTG GCAGCATTATCTGAAGATAGTAGATTGGAAAGTGGACAAGGCAATGCTCACGGAGATGCAAATTCAGTTCATCAAAATGAAACAGAGGTCGCCTCATTAT CCGCTGAGAAGGTCAAAGCTGCAGCCAGAACCGGGCTTGCTGCTGCTGCAACAAAGGGTAAGCTCTTTGCAGATCATGAAGAGCGTGAAATTCAGAGACT TTCTGCCATCATCATAAACCATCAGTTGAAAAGGTTAGAGCTGAAGCTGAAGCAGTTTGCAGAAGTGGAAACTCTTCTAATGAGAGAATGTGAACAAGTG GAGAAGATGAGGCAGAGGTTTGCAGCAGAGCGAGCTCGAATTCAGTCTATCAACATGGGATCTGCTATGCCCACTTTGCAAACAACCCAAACTGGTGTCG ACCCGTCCATGTCTGCACCTAGCAGTGTCAACAACAGACCCCAAATGATGCACGCCCCTTCATCACAACCGGGCATCTCTGGGTACGGTACCAGTCAGCA AATGCATCCGCACATGCAGTTCATGCAGCGAGGGATGTCTCCCTCGATGTTCCCTATGGGTCCAAGACTGCCCCTTTCGGCTATACAGCCATCGTCTTCT GGGCAGTCGAGTGTCATGTTTAATTCATCTGGTAATTAA
AA sequence Show only first row Show all	>Lus10029695 pacid=23151973 polypeptide=Lus10029695 locus=Lus10029695.g ID=Lus10029695.BGIv1.0 annot-version=v1.0 MQASPSFPSSDGRGKWKRRKRESQISRRIKPEDSDDDNNDEDDEGSEDQPNNAAAAGGNSSQYAPFPDPVEVLADGGVRICGFPPVARGSVERPHAWASA RCGRMAALSAVPAEGDQDRNDSGNSAASFVVTPPQIMEGRGVVKRFGSEVLVVPMHSDWFAPATVHRLERQVVPHFFSGKSTDHTPEKYMDCRNHIVAKY MENPKKRVTVSDCQGLVPGIGDEELSRIVRFLDHWGIINYCAAAPSRESWNSSSYLRDDVNGEVQVPSAALKSIDSLIKFDKPKCGLKADEIYSSISCHD NLSDLDNRIRERLSENCCNYCGHPLLNLYYQSQKDVDILLCCECFHDGRFVIGHSSLDFVKLDSTKHYGDGDAESWTDQETFRLLEAMEIYNENWNEIAE HVNSKSKAQCILHFLRLPMEDGRLENIEVPMVPNSSSVSNGNGDGASGLHSSSNGSCSQDNDLEIRLPFENSENPVMSLVAFLASAIGPRVAAACAHASL AALSEDSRLESGQGNAHGDANSVHQNETEVASLSAEKVKAAARTGLAAAATKGKLFADHEEREIQRLSAIIINHQLKRLELKLKQFAEVETLLMRECEQV EKMRQRFAAERARIQSINMGSAMPTLQTTQTGVDPSMSAPSSVNNRPQMMHAPSSQPGISGYGTSQQMHPHMQFMQRGMSPSMFPMGPRLPLSAIQPSSS GQSSVMFNSSGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10029695 [exp]	0	1
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	1.0	0.9351
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	3.5	0.9248
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	9.9	0.9247
AT3G63430			unknown protein		Lus10024836 [exp]	11.5	0.9183
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	12.4	0.9194
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	15.6	0.9220
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	15.9	0.9188
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	17.5	0.9065
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	18.7	0.9162
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	19.0	0.9167

Compare expression of checked genes

Lus10029695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.