Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 689 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 656 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 652 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 647 / 0 AAP5 amino acid permease 5 (.1) AT1G58360 545 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 538 / 0 AAP6 amino acid permease 6 (.1) AT1G10010 535 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 436 / 8e-150 AAP7 amino acid permease 7 (.1.2) AT5G40780 158 / 5e-43 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 156 / 2e-42 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042740 [exp] 913 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 781 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 774 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 774 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 738 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 655 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 627 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 570 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 554 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079500 [exp] 714 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 713 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 709 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 708 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 708 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 702 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 702 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 701 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 653 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 560 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10029702 pacid=23152055 polypeptide=Lus10029702 locus=Lus10029702.g ID=Lus10029702.BGIv1.0 annot-version=v1.0 ATGGTCGACAACGGCGTCAGCGACGGCAACGGGGAACTCCCTCACCACCGCCACCACCACACCCTAGACGTTTCCATGGACGCCCCTCCCTACGCCGCCA ACAAGTGCTTCGACGACGACGGCCGCCCCAAACGAACTGGATCCGTATGGACAGCAAGTGCCCACATCATTACCGCCGTCATCGGTTCCGGTGTCCTGTC CCTAGCTTGGTCTACCGCTCAGCTTGGTTGGATTGCTGGCCCCACCGTTCTCTTCTTGTTCTCCTTCGTCACTTACTATACCTCCGTCCTCCTCGCTGCT TGTTATCGCTCCGGAGACCCCGACACCGGCAAGCGTAACTACACTTACATGGACGCCGTCAAATCCCTTCTCGGTGATTTCCAGGAGAAGTTATGCGGCT ATGTTCAGTATGCCAATCTCTTCGGAACAGCCATCGGCTACACAATTGCTTCATCCATCAGCATGATGGCGGTGAAGAGGGCGAATTGTTTCCATAGAAG CGGAGGGACGGATCCTTGCCGCATGAACGCAAACCCATACATGATTGCCTTCGGAGTGGTAGAGATCCTCTTCTCCCAAATCCCTGATTTCGCTCAGCTT TCTTGGCTCTCCATCGTCGCCTCCGTCATGTCTTTCACTTACTCCTCCATCGGATTGGGTCTTGGCGTTGCTAAAGTCATCGAGAACAAGACCGTTAAAG GAACCCTCACCGGAGTCAGCATCAGCGCCGCCGTTTCCCCCACCGACAAGGTCTGGCTTAGCTTCCAGGCCCTCGGCGGCATTGCTTTCGCCTACTCCTT CTCCAACATCCTCATCGAAATTCAGGACACAGTGAAATCCCCGCCGTCAGAATCAAAGACAATGAAGAGAGCATCACTAATCAGCATCTTCGTAACCACC GTCTTCTACATGCTCTGCGGATGCTTCGGATACGCCGCCTTCGGAGACGATTCCCCTGGCAACCTCCTAACTGGATTCGGCTTCTACAACCCTTACTGGC TTCTCGACATAGCCAATGTCGCTATCGTCGTCCACCTGGTCGGGGCGTACCAAGTGTACGTCCAACCCATCTACGCGTTCGTTGAGAAAATCGCCGTCAA CAAGTACCCGGAGAGCTACTTCATCACCAAGGAAATCAGAATCCCGCTTGCCGGCGGCGGCGGGAACCGATACTACGATTTGAATCTGTTTAGATTTGTG TGGAGGACGGCGTTCGTGATCATCACGACGTTGATTTCGATGCTGTTGCCTTTCTTCAACGACATTGTGGGTTTGCTCGGCGCGTTGGGGTTCTGGCCGT TGACGGTTTATTTCCCCGTCGAGATGTACATTGCGCAGAAGAAGATTCCCAAGTGGAGCACCAGATGGCTTTCGCTACAGATTCTTAGCGCAGCTTGTTT GATTATTTCGGTGGCCGCCGCCGCCGGGTCGATTGCCGGGATAATTGTGGATCTTAAGTCGGTGAAGCCATTTGAGACTACTTACTAG
AA sequence Show only first row Show all	>Lus10029702 pacid=23152055 polypeptide=Lus10029702 locus=Lus10029702.g ID=Lus10029702.BGIv1.0 annot-version=v1.0 MVDNGVSDGNGELPHHRHHHTLDVSMDAPPYAANKCFDDDGRPKRTGSVWTASAHIITAVIGSGVLSLAWSTAQLGWIAGPTVLFLFSFVTYYTSVLLAA CYRSGDPDTGKRNYTYMDAVKSLLGDFQEKLCGYVQYANLFGTAIGYTIASSISMMAVKRANCFHRSGGTDPCRMNANPYMIAFGVVEILFSQIPDFAQL SWLSIVASVMSFTYSSIGLGLGVAKVIENKTVKGTLTGVSISAAVSPTDKVWLSFQALGGIAFAYSFSNILIEIQDTVKSPPSESKTMKRASLISIFVTT VFYMLCGCFGYAAFGDDSPGNLLTGFGFYNPYWLLDIANVAIVVHLVGAYQVYVQPIYAFVEKIAVNKYPESYFITKEIRIPLAGGGGNRYYDLNLFRFV WRTAFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTRWLSLQILSAACLIISVAAAAGSIAGIIVDLKSVKPFETTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029702 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	4.5	0.8874
					Lus10032375 [exp]	6.5	0.8730
					Lus10024153 [exp]	12.4	0.8341
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	17.0	0.8527
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	18.0	0.8508
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	18.3	0.8501
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	19.2	0.8456
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	20.3	0.8533
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	21.6	0.8232
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	24.7	0.8025

Compare expression of checked genes

Lus10029702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.