Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 675 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G44100 667 / 0 AAP5 amino acid permease 5 (.1) AT5G09220 653 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 644 / 0 AAP4 amino acid permease 4 (.1) AT5G49630 550 / 0 AAP6 amino acid permease 6 (.1) AT1G58360 547 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 540 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 410 / 4e-140 AAP7 amino acid permease 7 (.1.2) AT5G40780 153 / 2e-41 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 150 / 5e-40 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 683 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10042741 [exp] 680 / 0 AT1G77380 515 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 677 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 667 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 660 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 634 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 628 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10042744 [exp] 598 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 546 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079500 [exp] 676 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 675 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 675 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 673 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 673 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 672 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G181600 [exp] 669 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 664 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 639 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 566 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10029703 pacid=23152062 polypeptide=Lus10029703 locus=Lus10029703.g ID=Lus10029703.BGIv1.0 annot-version=v1.0 ATGATGGCTGCAAATGAAGAATTCGGCTACCCGGATGTCCATTCCCTTGACCTGGCCAAGGAATCGCTCGACGACGATGGTCGTCCCAGGCGGACTGGGA GTGTGTGGACGGCGAGCGCACACATAATAACGGCGGTGATCGGGTCGGGAGTGCTGTCGTTGGCATGGGCGATGGCTCAGCTGGGGTGGATAGCTGGTCC GGTGGTTATGATTCTGTTTTCGTTTGTGACTTATTATACTTCGACTCTGTTGGCTACCTGTTACCGTACTGGAGATCCTGTCACTGGAAAGAGGAATTAT ACTTACATGGATGCTGTCAAATCAAACCTTGGTGGGTCTACGGTGAAAATTTGTGGATATGTTCAGTATGTCAATCTGTTTGGAATTGCGATTGGGTACA CTATAGCATCAACCATTAGCATGATGGCAGTGAAGAGGTCGAACTGTCACCACAACAATGGAGATACAGGATCAAGATGCGAGGTGAATGCCAATCCATT CATGGTCGGATTCGGAATCGTGGAGATATTTCTGTCTCAAATCCCCGACTTCGATCAGCTATGGTGGCTCTCCATCGTGGCCGCAGTCATGTCCTTCACT TACTCCGGCATCGGACTAGGCCTTGGCATTGCCAAAGTCGGCGAAAACGGAGAAATCAAAGGAACTTCGACGGGAGTCACCGTCGGAGCCATAACGGAGA TGCAGAAACTATGGAGGTCGTTCCAGGCACTCGGTAACATTGCTTTTGCATATGCTTACTCCATCATCCTCATCGAAATCCAGGACACGGTGAAATCTCC CCCTTCAGAGGTGAAGACAATGAAGAAAGCAACAGCCATAAGCGTAGCAATCACAAGCATTTTCTACATTCTCTGCGGCAGCTTCGGCTACGCAGCGTTC GGAGACTTAGCTCCAGGAAACCTCCTGACAGGAAAGGGCTTCTACGAGCCGTACTGGCTAGTAGACATCGCCAACGTAGCAGTCCTAGTCCATCTGGTAG GTGCATACCAGGTATTCGCCCAGCCGATTTTCGCCTTCGTGGAGAAACACGCCTCCGCAAGGTACCCACACAGCCAGTTCATCACCAAGGAGATCAGAGT CTCCTCCAAGTACAGCCTGAACCTGTTCAGACTGACCTGGAGGACTTCGTTCGTGATCCTGACGACTTTGATATCGATGATCCTGCCGTTCTTTAATGAC ATTGTCGGGTTGTTGGGGGCCGTGGGGTACTGGCCGCTGACTGTTTACTTCCCGATCGAGATGTACATTGCGGCGAACAGGATTCCGAAGTGGAGCACGA GGTGGGTTGGGTTGGAGATTCTGAGTATGGTTTGCTTGATTGTTGCGATTGCTGCTGCTGTTGGGTCTATTGTTGGGGTGATTGGTGATTTGAAGTCTGT GAAACCGTTCCATGCCGATTTCTGA
AA sequence Show only first row Show all	>Lus10029703 pacid=23152062 polypeptide=Lus10029703 locus=Lus10029703.g ID=Lus10029703.BGIv1.0 annot-version=v1.0 MMAANEEFGYPDVHSLDLAKESLDDDGRPRRTGSVWTASAHIITAVIGSGVLSLAWAMAQLGWIAGPVVMILFSFVTYYTSTLLATCYRTGDPVTGKRNY TYMDAVKSNLGGSTVKICGYVQYVNLFGIAIGYTIASTISMMAVKRSNCHHNNGDTGSRCEVNANPFMVGFGIVEIFLSQIPDFDQLWWLSIVAAVMSFT YSGIGLGLGIAKVGENGEIKGTSTGVTVGAITEMQKLWRSFQALGNIAFAYAYSIILIEIQDTVKSPPSEVKTMKKATAISVAITSIFYILCGSFGYAAF GDLAPGNLLTGKGFYEPYWLVDIANVAVLVHLVGAYQVFAQPIFAFVEKHASARYPHSQFITKEIRVSSKYSLNLFRLTWRTSFVILTTLISMILPFFND IVGLLGAVGYWPLTVYFPIEMYIAANRIPKWSTRWVGLEILSMVCLIVAIAAAVGSIVGVIGDLKSVKPFHADF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10029703 [exp]	0	1
					Lus10008817 [exp]	2.8	0.7404
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	5.8	0.7553
AT3G09430			unknown protein		Lus10000245 [exp]	13.4	0.7400
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	22.2	0.6967
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	22.8	0.6967
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	23.4	0.6967
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	36.2	0.7273
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	37.0	0.7210
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10034908 [exp]	38.3	0.7313
AT3G47570			Leucine-rich repeat protein ki...		Lus10035429 [exp]	39.1	0.6830

Compare expression of checked genes

Lus10029703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.