Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 74 / 9e-15 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 74 / 1e-14 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 72 / 2e-14 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G35450 72 / 2e-14 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 72 / 3e-14 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G14460 72 / 3e-14 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G10920 72 / 3e-14 LOV1 NB-ARC domain-containing disease resistance protein (.1.2) AT5G43470 69 / 3e-13 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58400 69 / 3e-13 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 68 / 7e-13 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004127 [exp] 189 / 1e-54 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 189 / 1e-54 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 179 / 3e-51 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 176 / 4e-50 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 150 / 3e-41 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 142 / 3e-38 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10000934 [exp] 128 / 2e-34 AT3G04950 256 / 8e-84 unknown protein Lus10032781 [exp] 113 / 1e-31 AT3G14470 71 / 2e-15 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 89 / 1e-19 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123400 [exp] 113 / 2e-28 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 113 / 2e-28 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 111 / 7e-28 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 110 / 2e-27 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 110 / 3e-27 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 108 / 7e-27 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123000 [exp] 102 / 9e-26 AT3G14470 144 / 4e-38 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 104 / 3e-25 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 103 / 4e-25 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 102 / 1e-24 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10029704 pacid=23152147 polypeptide=Lus10029704 locus=Lus10029704.g ID=Lus10029704.BGIv1.0 annot-version=v1.0 ATGGTTGCTCAGATTGTTTCCTCAATCATCGGCCAGTTGGAATCCGTCCTGACCAAAGAGCTGAAGCGAAGAGGGAAGCTGGTCACAGGTGCGGAGAAAG ATGTGAAGAACCTCGCATCCACTTTCTCTGCCATTGAAGCTCTGTTGTTGGATGCTGAAGAGAGGCAACTTACTGATAAAGCCGTCAAAGACTGGGTGAC AAAGCTCAAGAATGTGTGCTGCAAGATCGACGATGTGCTGGACGAGTGGAGAACCGAGATCCTCAAGCGCCAGCTTGAGAATGAGGAGGATGACATTAAT GAGAACGACTATGGCTGGTTGGAGCTGAAGCTGCTTGAAATCTCGAACCTGCTTAAACGAGCAGAGAAGAAGAGACAGAGTTACTCAAAAGGGAAGTTGC TACAAATTAATGATGATGTTCGAAGTATCTCCATACAAGGTGCTGGTGGACTTGGAAAACCCACATTAGCAAAACTTCTCTACAAGGACGAAGTTGTGGG ATATCATTTCGACAAGAGAATTTGGGTTTGTGTGTCCGATACTTTTGACCCAACAACAGTCGCTAAAACCATGCTTGAATCTCTTACCGGTTATGCTCCG CAAAGTAACACATTGTCAATCATGTTGGAGAAAATAAGTGAGACGACTGAAAGCATGAGGTTCTTTCTCATTCTCGACGATGTGTGGGAAGATAGTCAGA GCAAATGGGAAGAGCTGAGGAGTGTGCTCTCTCGTGCAACTCGCTAG
AA sequence Show only first row Show all	>Lus10029704 pacid=23152147 polypeptide=Lus10029704 locus=Lus10029704.g ID=Lus10029704.BGIv1.0 annot-version=v1.0 MVAQIVSSIIGQLESVLTKELKRRGKLVTGAEKDVKNLASTFSAIEALLLDAEERQLTDKAVKDWVTKLKNVCCKIDDVLDEWRTEILKRQLENEEDDIN ENDYGWLELKLLEISNLLKRAEKKRQSYSKGKLLQINDDVRSISIQGAGGLGKPTLAKLLYKDEVVGYHFDKRIWVCVSDTFDPTTVAKTMLESLTGYAP QSNTLSIMLEKISETTESMRFFLILDDVWEDSQSKWEELRSVLSRATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10029704 [exp]	0	1
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10001553 [exp]	15.7	0.8292
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	28.4	0.8226
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	31.6	0.7780
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	62.4	0.7981
AT5G49960			unknown protein		Lus10036585 [exp]	80.8	0.7866
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	87.3	0.7860
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	118.2	0.7754
AT1G67060			unknown protein		Lus10028484 [exp]	145.2	0.7473
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016886 [exp]	160.6	0.7633
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	167.9	0.7521

Compare expression of checked genes

Lus10029704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.