Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 607 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 600 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 563 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19510 548 / 6e-178 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G18360 509 / 1e-164 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 511 / 2e-164 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 513 / 8e-164 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 510 / 1e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 506 / 3e-161 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 503 / 5e-161 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042753 [exp] 650 / 0 AT4G12010 121 / 3e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 636 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 593 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026201 [exp] 577 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 566 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 562 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 531 / 3e-169 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 530 / 1e-167 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019708 [exp] 514 / 7e-160 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070700 [exp] 788 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 768 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 709 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 704 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 689 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 683 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 664 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 655 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 638 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 635 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10029722 pacid=23151964 polypeptide=Lus10029722 locus=Lus10029722.g ID=Lus10029722.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTTCTTCCTCATTGGTTTCCGTTTCACCTGGATTCAAGTACGATGTGTTCCTCAGTTTCTGTGGTAAGGACACCCGCTACAGCTTCACCA GCCATCTCCACGCTGCTCTACTTCAGAAACAGATCAACACTTTCATCGACGACAGACTCACTAGAGGGCAAGAAATTTCCCCTGCCATCTCGAAAGCGAT CGAAAATTCCATGATCTCCATCGTCATCTTCTCCCCACACTATGCAGCCTCCAGTTGGTGCTTGGAGGAGCTGGTAAAGATTCTGGAAAGCAAGAAAGCA ATGGGCTCCATGGTTCTGCCTGTTTTCTACTCCGTCGATCCTTCCCACGTAGCGGAACAATCCGGAAGCTTCGGGGAGGCGTTTCGACTCATGGCGGAGG AGAAGGAGAGTACGGACACGGTCAAGGTCCAGAGATGGAGAGCTGCTTTGTCTGAAGCTGCCAATTTGTCCGGCTGGAGTTCCCTTGTCATCAAGCCGGA GATCAAGCTCATCCAGGAGCTTGTGAGACATGTTATGAGGAAGCTGGATTACATCTCGTCGTGGGAGTCCAGGGGTTTCGTCGGAGTCCATTCTCGTATC GAAGAGATTGAATCTTTGTCGTGGTTCGGTCTACCAGCCGTTGGGTTTCTAGGAATTTGGGGCATGGGAGGTGTGGGAAAGACGACGCTTTCCGAGTTAC TGTTTGAGAAAATCAAGGATAAATTTGACGCTTCCTGTTTTCTTGCCAATGTGAGGGATGATTGTAAGAGCTATGGACTCCCTAGACTGAGAGGGGAGCT CCTGTCCGCGTTACTGGATGACGAACATGCAAATGTTGGGGGGACGCCACATCATCACGATATCAGAGCTCGTTTTGTTAGGAACAGGTTGAGTCGTATG AAAGTTCTGATTGTTCTCGACGATGTGAGCGATCTAGGACAGGTGGATAGTTTAGCCGGAGACCGTAATTGGTTCGGGCCGGGTAGCAGGATCATCATTA CCAGTAGAGATAAGGAAGTTCTCGGCGCCGTAGTTGATAAATTGTACGAGGTTGAAGGGTTGAATGATCACGAAGCTCTCCAGCTCTTCAGTTCAAAAGC ATTCAGAAGAAAATTCTGTACTAGGTCGGATTACTTGGATATGTCGAGAAGAGCAGCCAACTACGCTCATGGCAATCCATTGGCGCTGAAAGTTATGGGA TCCTCCTTGTATGGCAAGACAAAGGCTGAGTGGAAATGTTCTTTGCAGAAGATAGAAAGGATCCCGAAACCGGAGATTCAGAATGTTCTGAGGACGAGTT ATGACGGTTTGGAAAATGAAGAGAAGGATATTTTTCTCGACATTGCATGCTTCTTTGTAGGGGAACACAAGGGCTTTGTTACACGGGTCCTCTATGGATG TGGCTTCGCTGCTGAGATCGGAATCCGCGTCCTTATCGACAAGTCTCTCGTCACTGTTTCAGACTCTAAGGTAGGGATGCATGCTCTACTGCAGCAAATG GGTAGGGAAATTGTTCGTCAGGAATCTGTTAAGGAGCCTGGCAGACGCACCAGGCTCTGGAGTCCTGAAGATGTGTACCACCTACTCAGCAAAAACACGG GAAGTGAAGCAGTTGAAGGGATATTCTTAGACATGTCTAAAATAGAGAGGGTCAACCTGAGTCCTGATGCGTTTGTAAGAATGCATAACTTGAGGCTGCT CAAGTTTTACAATTCTGACAACACATCCTACAGCAAAGTGTCTCTATCAGAAGGCTTGGATTCTATTTCTGACAAATTAAGCTACCTTTACTGGGATGGA TGTCCCTTGAAGTCTTTGCCATCCATTGGTAAAACGGCAAACCTCGTCGAGCTTAGCTTGCCTTCCAGTCACGTCGAAGTGCTTTGGGAGCGAAACAAGT GTCTGGAGAAATTGCACACAGTTAATCTTGGCAACTCCAGGTATTTGACAAGCTTCCCAAACCTTGCATCCGCTAGAAACCTGCAATCTTTGAAGCTTGA AGGCTGTTTGAGTTTAGTTAGAGTTCCATCATCCATCCAGTTTCTAAGGGAGCTCGTTGACCTGACAATGGAAAATTGCAAAACCCTGAGGATCATGCCG AGTTGCATTGATTTGCGGACACTGAAAAAGCTAAATCTCTCTGGATGTTCAAAGTTAAGATACTTGCAAGACATTCCAGGGAGCTTAGAGCATCTGAGTT TAAACGGGACCTCTATACGCAAACTACCAGGATCGATGGAGGCTCTTTCCAGACTCAACTTTTGGGGCATGAACCACTGCAAAAGGCTCAAGTACCTTCC TAGCAACATTGGAAAGATGACATCTCTCAAGACCCTTTCGGTCTCGGGATGCTCGAGGCTCGAGGCTTTACCTTCCAGCATCAAATTGCTGACTCAGCTT CAAAAGCTTGTCCTGAGCAACTGCAAACGCCTCAGGAGTTTACCGGAACTTCCTCAGGGGATTAGTATGTTGAATGCCAATGATTGCATTTCACTGGAAA GGCTGCCTTCTCCATCTATGGTTTCGGTGGGGAATGTCATGGTACCGAAAAACTGTCGTATCCAAATGTTTTCGTTTGCCAACTGTTCGAAGTTGTATCG GAATGCTGACAGCAATGTGGAGGCTGACTCATTCTTCAGGATTCATCATGCAGCGATATCAGCTGTGAAAAACTATCACCAGGGGATTCATTCATTGCCT TCCAATAGCATCTGTTACCCTGCAAGAAGCATCCCAAGGTGGTTTAGATATCAAAGCAATGGTTCCTCTATAACCATCAAACTAGCTCCAAATTGGCTGA ATAGCGATTTCTTGGGATTCGCACTGAGCGCTGTCATCGCAACCAAAGACCGAAAGATATTTGGTTCAACTGATGTAGGGTGCCAATGCAGTCTTAGAAC AGCCAGCGGAGATCGACATGATGTGCTGTGTTGTAGGTTGGGGTTTTCCGCAATGCATGGAAAGAGGGATTTCACGTGTGCTGATCATGTGGTGATCCGC TACGACTTCAGTCTCTGTCAAAGACTCTTCCATAAGCAAAAGAATTCACAGATTTACCAGAGTGCAACATTCAAGTTCTACCCGGAGCAAACGGATTCGA GGTACTTCCCGGCGTGGTTTCCAGTTCAGAAATGTGGGGTTCATCTACTCTATGGGCAGTATGAGGTTGAAAGCAGCAGTAGCAGGGTTTCACCGTTGGT TCAGCCTGGCTCTCCTTCTGATTCGACTTCGTTGCGACTTTATGGTGGAAGGTAA
AA sequence Show only first row Show all	>Lus10029722 pacid=23151964 polypeptide=Lus10029722 locus=Lus10029722.g ID=Lus10029722.BGIv1.0 annot-version=v1.0 MSSSSSSLVSVSPGFKYDVFLSFCGKDTRYSFTSHLHAALLQKQINTFIDDRLTRGQEISPAISKAIENSMISIVIFSPHYAASSWCLEELVKILESKKA MGSMVLPVFYSVDPSHVAEQSGSFGEAFRLMAEEKESTDTVKVQRWRAALSEAANLSGWSSLVIKPEIKLIQELVRHVMRKLDYISSWESRGFVGVHSRI EEIESLSWFGLPAVGFLGIWGMGGVGKTTLSELLFEKIKDKFDASCFLANVRDDCKSYGLPRLRGELLSALLDDEHANVGGTPHHHDIRARFVRNRLSRM KVLIVLDDVSDLGQVDSLAGDRNWFGPGSRIIITSRDKEVLGAVVDKLYEVEGLNDHEALQLFSSKAFRRKFCTRSDYLDMSRRAANYAHGNPLALKVMG SSLYGKTKAEWKCSLQKIERIPKPEIQNVLRTSYDGLENEEKDIFLDIACFFVGEHKGFVTRVLYGCGFAAEIGIRVLIDKSLVTVSDSKVGMHALLQQM GREIVRQESVKEPGRRTRLWSPEDVYHLLSKNTGSEAVEGIFLDMSKIERVNLSPDAFVRMHNLRLLKFYNSDNTSYSKVSLSEGLDSISDKLSYLYWDG CPLKSLPSIGKTANLVELSLPSSHVEVLWERNKCLEKLHTVNLGNSRYLTSFPNLASARNLQSLKLEGCLSLVRVPSSIQFLRELVDLTMENCKTLRIMP SCIDLRTLKKLNLSGCSKLRYLQDIPGSLEHLSLNGTSIRKLPGSMEALSRLNFWGMNHCKRLKYLPSNIGKMTSLKTLSVSGCSRLEALPSSIKLLTQL QKLVLSNCKRLRSLPELPQGISMLNANDCISLERLPSPSMVSVGNVMVPKNCRIQMFSFANCSKLYRNADSNVEADSFFRIHHAAISAVKNYHQGIHSLP SNSICYPARSIPRWFRYQSNGSSITIKLAPNWLNSDFLGFALSAVIATKDRKIFGSTDVGCQCSLRTASGDRHDVLCCRLGFSAMHGKRDFTCADHVVIR YDFSLCQRLFHKQKNSQIYQSATFKFYPEQTDSRYFPAWFPVQKCGVHLLYGQYEVESSSSRVSPLVQPGSPSDSTSLRLYGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10029722 [exp]	0	1
AT5G25820			Exostosin family protein (.1)		Lus10002799 [exp]	7.3	0.7700
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	10.6	0.7189
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	11.2	0.8020
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	24.7	0.7514
AT3G62930			Thioredoxin superfamily protei...		Lus10005941 [exp]	26.4	0.7230
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Lus10026212 [exp]	27.7	0.7031
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	28.1	0.7390
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	42.1	0.7081
AT3G48200			unknown protein		Lus10002461 [exp]	43.8	0.7097
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	55.4	0.6836

Compare expression of checked genes

Lus10029722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.