Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17950 196 / 1e-61 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G73410 189 / 4e-59 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT1G69560 190 / 2e-58 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 189 / 2e-58 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT4G33450 182 / 3e-56 MYB ATMYB69 myb domain protein 69 (.1) AT5G17800 184 / 4e-56 MYB ATMYB56 myb domain protein 56 (.1) AT3G29020 173 / 8e-53 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G67300 133 / 1e-36 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT5G39700 130 / 1e-36 MYB ATMYB89 myb domain protein 89 (.1) AT2G39880 132 / 6e-36 MYB ATMYB25 myb domain protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028638 [exp] 206 / 5e-65 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10018936 [exp] 202 / 2e-63 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031900 [exp] 195 / 9e-60 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10026611 [exp] 196 / 1e-59 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10030452 [exp] 195 / 1e-59 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031326 [exp] 194 / 1e-59 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10005683 [exp] 179 / 4e-54 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10040239 [exp] 142 / 7e-39 AT3G55730 315 / 1e-104 myb domain protein 109 (.1) Lus10028250 [exp] 140 / 1e-38 AT3G55730 306 / 2e-101 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039400 [exp] 201 / 9e-64 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 200 / 3e-63 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.005G186400 [exp] 196 / 2e-60 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.017G017600 [exp] 191 / 6e-60 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.007G134500 [exp] 190 / 3e-59 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.002G073500 [exp] 192 / 7e-59 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.008G088000 [exp] 195 / 8e-59 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.007G106100 [exp] 189 / 1e-58 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.010G167500 [exp] 192 / 6e-58 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 192 / 8e-58 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029746 pacid=23152124 polypeptide=Lus10029746 locus=Lus10029746.g ID=Lus10029746.BGIv1.0 annot-version=v1.0 ATGGCAGAATCTTCAGCTGATGCAGCTATCAACACTAGTTGTAATGAAAGGAGATCAGATGTAATATTAACCTCATCTTATTCTCCTTCTTCATCATCTT CTTCTTATAGTCATTATAATTCATCATCTTGTTTAAGAGGCCATTGGAGACCTGCTGAAGATGAGAAGCTCAGGCAGCTAGTCCACCAGTACGGTCCTCA CAACTGGAATTCCATCGCCGACAAGCTCAAAGGCCGATCAGGGAAGAGTTGTAGATTGAGATGGTTCAACCAACTGGACCCAAGAATCAACAGAAGACCC TTCACAGAAAAGGAAGAAGAGAGGTTGATGGCGGCTCACCGCGTCCACGGCAACAAGTGGGCCCTCATCTCCCGACTCTTCCCCGGTCGGACTGATAACG CCGTCAAGAACCACTGGCACGTCATCACCGCTCGCAAGCACCGACAACACTACTCCAAGCTCTCCGCCTCCAACAACAACATCAGTACTAGATGTAACCA CCTCCCTCGTACTAGTACGAGCTCACAATCACATTATCATCTTAATCGGGCTATTTATGGTAATACCCATAGTATAAGTATCAGTATTAACGGGAATAAT AAGAATAGTAGTAATAATAACAACAACGATGCCACCCGTGGCTGCTTGTGGAGTACTTGGCCGAGAGTTGTTCCAAGATTTCCATTTGGGTACTTGAAGC ACGGAATTGATGACGATCATGATGATGTCGACGACGGAGTTCGTGAAAATAATAAGAAGAAAGTGTTAGGGGATCATGTTCATGATCGTCACCATGAATT ATTACCGTTCAGTAACGATGACGATCAGATTCGTGAGGTGGAGGAGCAAGGAGATGATGAAATCATAAGAGTAATGTACAAAGAGGAGGAGGATGCTCCT AACTTCATTGATTTTCTAGGCGTAGGTACATGA
AA sequence Show only first row Show all	>Lus10029746 pacid=23152124 polypeptide=Lus10029746 locus=Lus10029746.g ID=Lus10029746.BGIv1.0 annot-version=v1.0 MAESSADAAINTSCNERRSDVILTSSYSPSSSSSSYSHYNSSSCLRGHWRPAEDEKLRQLVHQYGPHNWNSIADKLKGRSGKSCRLRWFNQLDPRINRRP FTEKEEERLMAAHRVHGNKWALISRLFPGRTDNAVKNHWHVITARKHRQHYSKLSASNNNISTRCNHLPRTSTSSQSHYHLNRAIYGNTHSISISINGNN KNSSNNNNNDATRGCLWSTWPRVVPRFPFGYLKHGIDDDHDDVDDGVRENNKKKVLGDHVHDRHHELLPFSNDDDQIREVEEQGDDEIIRVMYKEEEDAP NFIDFLGVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	1.4	0.8922
AT5G59050			unknown protein		Lus10001433 [exp]	2.0	0.8607
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	2.6	0.8298
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	2.8	0.8264
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	2.8	0.8434
AT3G27030			unknown protein		Lus10041550 [exp]	3.9	0.8429
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	4.9	0.8235
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	5.4	0.7808
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	5.7	0.8156
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	5.7	0.8446

Compare expression of checked genes

Lus10029746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.