Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21450 682 / 0 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 421 / 2e-142 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 393 / 3e-130 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 381 / 5e-128 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 366 / 2e-120 GRAS SCL13 SCARECROW-like 13 (.1) AT5G52510 256 / 6e-77 GRAS SCL8 SCARECROW-like 8 (.1) AT3G03450 226 / 1e-66 GRAS RGL2 RGA-like 2 (.1) AT1G66350 221 / 4e-65 GRAS RGL1 RGA-like 1 (.1) AT1G07530 221 / 5e-63 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G17490 213 / 4e-62 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042776 [exp] 1150 / 0 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10012323 [exp] 417 / 2e-140 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 417 / 4e-140 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 402 / 7e-135 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 392 / 7e-130 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 379 / 1e-125 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 378 / 6e-125 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 374 / 3e-123 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10003772 [exp] 309 / 7e-102 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G073400 [exp] 835 / 0 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 817 / 0 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 429 / 7e-145 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 423 / 9e-143 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 405 / 6e-135 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 392 / 5e-130 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.016G009700 [exp] 378 / 5e-125 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 369 / 1e-121 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.017G142400 [exp] 276 / 3e-84 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.004G078800 [exp] 261 / 1e-78 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10029747 pacid=23152120 polypeptide=Lus10029747 locus=Lus10029747.g ID=Lus10029747.BGIv1.0 annot-version=v1.0 ATGTCTCTGGTAAATCCAACTTCAGCCACTCCTTATGGAAATCATAAACTGTATCCCCTCAAGGGAAGCACCGAGAAGTCTGGTTTATCGACACAAATGT TTGGCCCCGACAGAAATGCAGCCATTTACACCACTGATTCTTGCTCCAGCGAGAGTTACGAGAAGTACTTCTTGGACTCTCCTTCAGAAGAAGTTATCCA GCCGTCTGTTTCTGGAAATTCTGGAGATTCTTCTTATCAACTGAGAACTGGTTCTGGTTCCGGTTCTTCAATAGCTGCTGAAGTTCCATACCATGCTTAT GTAGTCAATTCTTCTGAACCTGATTTCCTGGATGTTGCTCCAAGTCCTGATACCGAAGCATATGATGAAACCGAGCTTAATATAAAGCTTCAGGAGCTGG AAAGAGCATTGCTTGACGATGATGGACAAGACGATGAAGCTTATGCAAATAACCAAAGCATGGAGATTGAAAGTGAATGGTCTGATCAAATGCAGAATCC AATGCTTTATGATTCACCCAAGGAATCTTCATCCATGGATTCTAATCTTAGTAGCATCGGAAGTTGTAAAGAAGTGTGTCAGCTATCTCCAAGGACACCG AAGCGACTGCTCTTCGAATGTGCCACTGCAATTTCAGCAGGGAACATTCAGGGAGCTGCAGCTATAATAACCGAGCTCCGACAGATGGGCTCGATCCAAG GAGATCCCGCATCTCGAATCGCAGCATATATGGTCGAAGGTCTTGCAGCCAAAATTGCTTCCTCTGGTAAATACCTTTACAAAGCTCTGAAATGCAAAGA GCCGCCTTCTTCTGATAGGCTTGCTGCCATGCAGATCCTCTTTGAGATTTGCCCTTGTTTTAAGTTCGGGTTTATGGCTGCAAATGGTGCGATGATCGAT GCTTTCAAAGGCGAAAAGAAAGTTCATATTATCGACTTCGATATCAACCAAGGCAATCAGTACATTACACTGATACAAACACTTGCAAACCAGGGAGGTA AGCTGCCATATATACGGTTGACAGGTGTTGACGATCCGGAGTCTGTTCAACGACCAATCGGTGGCCTTTCCATAATCGGCCTTAGGCTCGAGAAGCTTGG AGAAGCACTTAAGGTGCCATTTGAATTTCGTGCTGTGGCATCCAAGACTGCACTTGTTAGCCCATCGATGTTGGAATGCAGGCCCGGGGAAGCACTCATT GTAAATTTCGCCTTCCAGCTTCACCATATACCCGATGAGAGCGTGTCAACGGTGAACGAGAGAGACCAGCTGCTCCGTACCGTTAAGAGCATGAATCCAA AGCTTGTGACTCTCGTGGAACAAGATGTTAATACAAACACGACTCCTTTCGTTCAGAGGTTTGTTAACGCTTATGACTACTATTCCGCTGTGTACGAGTC GCTCGATGTGACTTTGCCAAGGGAAAGCCAGGACCGGATCAATGTCGAGAGGCAGTGTCTGGCGAGGGACATAGTTAACATCGTGGCGTGTGAGGGAGAG GAGAGGATCGAGCGGTACGAGGTTGCTGGTAAGTGGAGAGCAAGGATGATGATGGCTGGTTTCACGCCGCGAAGTATGGGTCCAAATGTGGTGGAGATGA TAAGGAAAGTCATAAAGGAGTATGGTGTGAGGTTTACCTTGAAAGAGGAGATGGGTTCTCTCCAGTTTGGTTGGGAAGAGAGAAGCTTGATTGTTGCTTC AGCATGGAGGTGA
AA sequence Show only first row Show all	>Lus10029747 pacid=23152120 polypeptide=Lus10029747 locus=Lus10029747.g ID=Lus10029747.BGIv1.0 annot-version=v1.0 MSLVNPTSATPYGNHKLYPLKGSTEKSGLSTQMFGPDRNAAIYTTDSCSSESYEKYFLDSPSEEVIQPSVSGNSGDSSYQLRTGSGSGSSIAAEVPYHAY VVNSSEPDFLDVAPSPDTEAYDETELNIKLQELERALLDDDGQDDEAYANNQSMEIESEWSDQMQNPMLYDSPKESSSMDSNLSSIGSCKEVCQLSPRTP KRLLFECATAISAGNIQGAAAIITELRQMGSIQGDPASRIAAYMVEGLAAKIASSGKYLYKALKCKEPPSSDRLAAMQILFEICPCFKFGFMAANGAMID AFKGEKKVHIIDFDINQGNQYITLIQTLANQGGKLPYIRLTGVDDPESVQRPIGGLSIIGLRLEKLGEALKVPFEFRAVASKTALVSPSMLECRPGEALI VNFAFQLHHIPDESVSTVNERDQLLRTVKSMNPKLVTLVEQDVNTNTTPFVQRFVNAYDYYSAVYESLDVTLPRESQDRINVERQCLARDIVNIVACEGE ERIERYEVAGKWRARMMMAGFTPRSMGPNVVEMIRKVIKEYGVRFTLKEEMGSLQFGWEERSLIVASAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	0	1
AT4G21865			unknown protein		Lus10023724 [exp]	1.0	0.8902
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	1.4	0.8813
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	2.4	0.8810
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	3.2	0.8441
					Lus10018550 [exp]	4.9	0.8285
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	5.3	0.8508
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	6.5	0.8372
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	7.3	0.8219
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	10.9	0.8356
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	12.6	0.8053

Compare expression of checked genes

Lus10029747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.