Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 380 / 2e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 383 / 4e-114 transmembrane receptors;ATP binding (.1.2) AT1G27180 365 / 4e-107 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 351 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G56540 301 / 1e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 297 / 3e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46270 295 / 3e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 293 / 2e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 293 / 3e-83 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 290 / 3e-83 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023272 [exp] 907 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038533 [exp] 891 / 0 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 802 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 800 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 799 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 793 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 785 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10020536 [exp] 781 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020534 [exp] 776 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053200 [exp] 425 / 1e-129 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G001600 [exp] 408 / 1e-125 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 408 / 1e-124 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 404 / 1e-123 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 399 / 3e-122 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 395 / 5e-122 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 399 / 6e-122 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 400 / 6e-121 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G002500 [exp] 399 / 6e-121 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G004599 [exp] 394 / 6e-120 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10029860 pacid=23159771 polypeptide=Lus10029860 locus=Lus10029860.g ID=Lus10029860.BGIv1.0 annot-version=v1.0 ATGGAGATATGTGTATTCTTCTGGACACTGGCCGCACTTTTCCCAGCACTGGCCGCACTTTTCCACTGGAAGAAGAAGCAGAGCTCCCAAATCCCCATCA ATAAACCTACTACATCTACATCATCATCCACCTCTAATTCTAATTCGTCGTCGCGAACGGAGTACGAGGTTTTCCTGAGCTTCAGAGGCCCCGAGGTCCG AACCAATTTCGCGGATTTCCTCTACAGTCACTTGGACCGTTCGAGGATCCGCACTTTTCTCGACGAAGAAGGGCTCCACAAGGGGGAGGAAATCGCGCCT TCGCTTCTGAAGGCGATAGAGGAATCGAAGGTGTACATCCCGATCCTTTCGAGAAATTACGCTTCTAGCAAATGGTGCCTCCGGGAGCTGGCTAAGATGG TGGAGTGCTGTAAACAAGGGAACGGTCACGTTTTGCTTCCGATTTTCTATATGGTGGATCCAAGAGACGTAAGGCATCCTGATGAAGGTTGTTACGGAGG CGCGTTTCGAGAGCACTGTAAGAATCATGATGCCGGAACGGTTGGAGATTGGAGGGATGCTCTTGGAGAGGTTGGGAAGATGAAGGGATGGCATGTCACC GAGATTGATAGGCAAGGAGCTATCATAGACCAAGTTTTCTCTAAGGTATGGTCTGAACTAAGGATGAAATACATGCTACATACTGATCATCTAATCGGTA TCGATTCTCGTATACGAAAGATGAAGATGCTATTACAATTAGACTATGAAGGTGTGAAAGCTATAGGCATCCATGGTATGGGCGGTATCGGCAAGACCAC CATAGCCAAGGCTATATACAACGAAGTTCGAGGCAAATTCGATCACTATTGCTTTGTAGAAGACGTACGAGAAACACTATCGTCAAAGACAAACGGCATC GTGAGTCTGCAGAGGAAAGTAATATGTAGCATTCTGAGAAGTGACTGCAAGGTTAAAGATGCCAATGAAGGAATAAACATAATAAAAGACAGTGTTCACA AGCGTAAGGTTCTTATCGTCCTGGATGATGTAGATAATACGTTCGAGTTCGACAGAATTTTTGGGAGACTAGAGGATTTTAACTACTCGGGAAGTAGATT TATCATCACGACGAGAGACAGAAGAGTCATGGACTTGTTTCAACCGTATGAGCTATACGAACCGGAAGAAATGAACGAGGATGATTCCCTTCGACTTTTC AGTAGACATGCCTTTGGAGTGGATCATCCTCCGACCGAGGAGGATGTTCGTTTGTCAATGAAGTTTGTAAAAGCCGCATCGTGTCTCCCTTTGTCGCTAA AAGTGATAGGATCTCTCTTGTTTCGTAGAGACGAGACCTTTTGGGGAGAAGCTTTGAAGAAATTGAAAAACGTGCTTCCTTCCGAGGTGCAAGAACGGTT AAGGATTAGCTATAACACACTAAGGTACGAGGAACAACAAATATTTCTCGACATTGCTTGCTTTCTTGTCGGACAAGATAAAGCAAAATCGTTCCATATG TGGAATAGTTGTGGTTATCATCCGGAAGTTGGGATAGCCACTCTCATCGAGAGATCTTTTGTCAAAATCAACCAAACAGACGAGAAAGAAGAGTTCTGGA TGCATGATCATATGATAGATCTCGGGAGAAAAATCGTTCGAGAAGAAGATATCGAATGTCCGTGGAAACGCAGCAGGATATGGTCTAATAGGGATGCCAT GGACATGTTGGCTCATGAAAAGGGAACCGGCCGAGTGAAAGCTCTTCGAGTTGAAACCCGAGACAAGAGCTTCAAGTTAACGGTTAGACAATTTGAGAAA CTGACAGAATTAAGGTATCTTGAGGTGGTTTATGGGAACTTTGAGGGGGATTTCAAGAATATTCTCCCAGACATACGTTGGCTTGAAATGCGCGGTTGCA ACTCAAATCTCATTGATTGTGATATGAAGAAACTGGTGATTCTCAGTCTAAATCATTGCAGTGTCACAAAAGATTGGAGAGGTTGGGAAAATATAAAGGC GGCCAACAACCTTAAAGCAATATGCCTACGCCGTTGCAATTCCATACGATTTTGGGTGCCAGACTTGTCCGAATGCAGAAACCTAGAGTCGATAGACATT CGAGTTTGCGAGGGGATGAGGGGGGAACTCGATGTTGGCAACTTACGATATCTTAAAATGCTGACGATCTCAAACTCTCCTATAACCAAGTTATTAGGCG ACTTCGGAAAGCTTCGGAATCTGCAAGAGATTACCGTTCGGGGTGGACATTTGAGGAGTTTTCCCGACGGTATAACCAGACTATCCTCATCCCTTGTCCA CTTGTCCATACAGACGCATGGCATGACCAATAAGAAACCGGTGACACTCCCCACGAGCTTAAAGCGGGTACAACTCGATTCGACGACTTGTGTCCCTAAT CTCGCGGGCCTAAAGAACTTGGAAGAGTTGGAGTTTTACGGTTATATGTGTCGATTTCCAAAGGATATGAGGAAGAAACTGTCCAAGTTGAAATCTCTAA TGTTGACATATTTTGGATGTGCCGGTCTATTGGACGATGATGCCGATTGCGGTCTCCCTTCGTCTTTAGTCAGCCTCGAGATTAAGTCCAGTATGAGCCT GGTCAAGCTGCCGGATCTTGGAAATCTCAGTAGTTTGAGGGTGTTGTTCTTATGGAAGACCAGCGTACGTGAGATTCCTGGTTTAGGGAAGTTGAGGATG CTGAGGACTTTGAAGATCGTCGAAGCTCCCGGTTTGATGAATCTGGACGGGGTGGAACATCAAACGCTTCTCACGACTTTGATTGTCGAGGGATGTGACT TGCTGGAGAAGTTACCTGATATGTCTTGTTTCAAGCATTTGCAGAGCTTGACTATCTTGGGATGCAAGAAACTGGCTGGAGTTAGTGGGATCGAGAATCT TGAGGGTTTAACCACACTCAGGATAGATAAGAGACTCGACATTCCACCGTTGCGAAGGACCGTAAAGATTTTTAGCAAGTAG
AA sequence Show only first row Show all	>Lus10029860 pacid=23159771 polypeptide=Lus10029860 locus=Lus10029860.g ID=Lus10029860.BGIv1.0 annot-version=v1.0 MEICVFFWTLAALFPALAALFHWKKKQSSQIPINKPTTSTSSSTSNSNSSSRTEYEVFLSFRGPEVRTNFADFLYSHLDRSRIRTFLDEEGLHKGEEIAP SLLKAIEESKVYIPILSRNYASSKWCLRELAKMVECCKQGNGHVLLPIFYMVDPRDVRHPDEGCYGGAFREHCKNHDAGTVGDWRDALGEVGKMKGWHVT EIDRQGAIIDQVFSKVWSELRMKYMLHTDHLIGIDSRIRKMKMLLQLDYEGVKAIGIHGMGGIGKTTIAKAIYNEVRGKFDHYCFVEDVRETLSSKTNGI VSLQRKVICSILRSDCKVKDANEGINIIKDSVHKRKVLIVLDDVDNTFEFDRIFGRLEDFNYSGSRFIITTRDRRVMDLFQPYELYEPEEMNEDDSLRLF SRHAFGVDHPPTEEDVRLSMKFVKAASCLPLSLKVIGSLLFRRDETFWGEALKKLKNVLPSEVQERLRISYNTLRYEEQQIFLDIACFLVGQDKAKSFHM WNSCGYHPEVGIATLIERSFVKINQTDEKEEFWMHDHMIDLGRKIVREEDIECPWKRSRIWSNRDAMDMLAHEKGTGRVKALRVETRDKSFKLTVRQFEK LTELRYLEVVYGNFEGDFKNILPDIRWLEMRGCNSNLIDCDMKKLVILSLNHCSVTKDWRGWENIKAANNLKAICLRRCNSIRFWVPDLSECRNLESIDI RVCEGMRGELDVGNLRYLKMLTISNSPITKLLGDFGKLRNLQEITVRGGHLRSFPDGITRLSSSLVHLSIQTHGMTNKKPVTLPTSLKRVQLDSTTCVPN LAGLKNLEELEFYGYMCRFPKDMRKKLSKLKSLMLTYFGCAGLLDDDADCGLPSSLVSLEIKSSMSLVKLPDLGNLSSLRVLFLWKTSVREIPGLGKLRM LRTLKIVEAPGLMNLDGVEHQTLLTTLIVEGCDLLEKLPDMSCFKHLQSLTILGCKKLAGVSGIENLEGLTTLRIDKRLDIPPLRRTVKIFSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10029860 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	5.5	0.8503
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	7.3	0.8176
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	7.4	0.8441
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	10.8	0.8789
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	15.0	0.8335
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	15.6	0.8724
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	19.3	0.8146
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	21.9	0.8675
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10027748 [exp]	26.4	0.8511
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	26.6	0.8492

Compare expression of checked genes

Lus10029860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.