Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05530 800 / 0 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 786 / 0 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT4G29040 335 / 7e-112 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 335 / 2e-111 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G20000 320 / 3e-106 RPT6A AAA-type ATPase family protein (.1) AT5G19990 319 / 8e-106 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G53750 317 / 8e-105 RPT1A regulatory particle triple-A 1A (.1) AT5G58290 305 / 2e-100 RPT3 regulatory particle triple-A ATPase 3 (.1) AT1G53780 306 / 1e-98 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G43010 298 / 9e-98 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031492 [exp] 805 / 0 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10020654 [exp] 770 / 0 AT3G05530 783 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10015524 [exp] 331 / 2e-111 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 330 / 9e-108 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 324 / 3e-107 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10031815 [exp] 318 / 5e-105 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 317 / 7e-105 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10019995 [exp] 330 / 1e-104 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031243 [exp] 318 / 2e-103 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G016800 [exp] 805 / 0 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.005G025100 [exp] 804 / 0 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.014G194700 [exp] 335 / 1e-111 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 332 / 2e-110 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.001G161700 [exp] 319 / 1e-105 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 317 / 8e-105 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.006G216600 [exp] 317 / 8e-105 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 314 / 2e-103 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 313 / 2e-103 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.006G031000 [exp] 305 / 2e-100 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10029887 pacid=23159683 polypeptide=Lus10029887 locus=Lus10029887.g ID=Lus10029887.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGATGGTGGAAGACACCAACTTCGAGGAGGATCAGCTAGCTTCCATGTCCACCGACGACATCCTCAGAGCTTCCAGGCTTTTGGATAACG AAATCCGAATTCTTAAGGAAGAATCGCAAAGGACGAATTTGGAACTGGAGTCGTATAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAGCTGAACAA GCAGCTTCCTTACTTGGTTGGGAACCTTGTTGAGATTCTGGAGATGAATCCGGAAGATGATGCTGAAGAAGATGGTGCGAACATTGACCTCGATTCCCAG AGGAAAGGGAAGTGTGTAGTTCTAAAGACATCTACTCGTCAGACTATTTTTCTCCCTGTGGTCGGTCTGGTTGATCCGGACAAGTTGAAGCCGGGGGACT TGGTTGGAGTTAACAAAGATAGCTACTTGATCCTCGACACGCTTCCTTCCGAGTATGATTCTCGTGTTAAGGCTATGGAGGTTGATGAGAAGCCTACCGA GGACTACAATGACATTGGAGGCTTGGAGAAGCAGATCCAAGAACTAGTAGAGGCTATTGTGTTACCAATGACTCATAAAGAGAGGTTTCAGAAGTTGGGG ATTCGGCCCCCGAAAGGGATCCTCTTGTATGGCCCTCCCGGTACCGGGAAAACATTGATGGCACGTGCTTGTGCTGCTCAGACGAATGCCACTTTTCTGA AGCTTGCAGGTCCGCAACTTGTGCAGATGTTCATCGGTGATGGAGCAAAGCTCGTCCGAGATGCATTTCAGCTTGCGAAAGAGAAGTCGCCATGCATCAT TTTCATTGATGAGATTGATGCAATTGGGACAAAGCGGTTCGACAGTGAGGTTAGTGGTGACAGAGAGGTTCAGAGGACTATGTTGGAGTTGCTCAACCAG CTTGATGGGTTTAGCAGTGATGACAGGATCAAGGTGATTGCTGCAACAAATCGAGCTGATATCCTGGACCCTGCTCTTATGCGTTCTGGTCGTTTGGATC GTAAAATCGAGTTCCCCCATCCAACCGAAGAAGCAAGATCCCGGATCTTACAGATCCACTCGAGGAAGATGAACGTTCACCCTGACGTAAACTTCGAGGA ACTGGCACGCTCGACCGACGATTTCAATGGCGCGCAGCTGAAAGCTGTGTGTGTGGAGGCTGGAATGCTTGCCCTTCGCCGCGATGCAACCGAGGTGAAT CATGAGGATTTCAACGAAGGGATCATCCAGGTGCAAGCCAAGAAGAAAGCAAGCTTAAATTATTATGCTTAA
AA sequence Show only first row Show all	>Lus10029887 pacid=23159683 polypeptide=Lus10029887 locus=Lus10029887.g ID=Lus10029887.BGIv1.0 annot-version=v1.0 MATPMVEDTNFEEDQLASMSTDDILRASRLLDNEIRILKEESQRTNLELESYKEKIKENQEKIKLNKQLPYLVGNLVEILEMNPEDDAEEDGANIDLDSQ RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLG IRPPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARSRILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN HEDFNEGIIQVQAKKKASLNYYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10029887 [exp]	0	1
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	2.4	0.8192
AT4G01290			unknown protein		Lus10036389 [exp]	2.8	0.8030
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10034457 [exp]	4.0	0.7638
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	4.5	0.7960
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	13.9	0.7998
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	14.0	0.7875
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	14.1	0.7725
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	16.0	0.7796
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	20.0	0.7556
AT4G02720			unknown protein		Lus10042601 [exp]	20.3	0.7805

Compare expression of checked genes

Lus10029887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.