Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54870 503 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 457 / 5e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 108 / 6e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 103 / 8e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G12800 103 / 1e-25 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G29350 102 / 3e-25 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29290 100 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26770 100 / 3e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 100 / 3e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 99 / 4e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004471 [exp] 602 / 0 AT1G54870 501 / 5e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021931 [exp] 386 / 9e-136 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033745 [exp] 379 / 6e-133 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 120 / 2e-31 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 109 / 9e-28 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 108 / 1e-27 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 108 / 1e-27 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017129 [exp] 108 / 1e-27 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10040730 [exp] 108 / 2e-27 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023900 [exp] 533 / 0 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 397 / 4e-140 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 296 / 1e-101 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 186 / 1e-58 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 181 / 3e-56 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 119 / 2e-31 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 117 / 2e-30 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 109 / 6e-28 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 108 / 6e-28 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 108 / 8e-28 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10029937 pacid=23159741 polypeptide=Lus10029937 locus=Lus10029937.g ID=Lus10029937.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGTGGTGGCGATCAGACGTTTCCTTCTCAGCAGCAGAGGGACCAGCCTGGTAAAGAACATGTTATGGACCCCACTCCTCAGTTCTCCAACC CTGACTATAAGCCTTCCAATAAGCTTCAGGGGAAGGTGGCACTGGTGACAGGAGGAGACTCGGGGATCGGCAGAGCAGTCTGTCACACCTTTGCCATGGA AGGCGCAACGGTGGCCTTCACCTACGTGAAGGGCAAAGAAGATAAGGACGCTCAAGACACACTCCAGATGCTGAAGAAGGTCAAAACCCCTGACGCCAAA GACCCAATAGCCATCCCTGGTGACCTTGGCTTCGACGAGAACTGCCGTAGAGCCGTCGAAGAGGTCGCCAACGCCTTCGGCAGGATTGACATCCTTATAA ACAACGCTGCCGAGCAGTATGAGTGTACCACCGTCGAGGAAATCGATGAGCCGAGGCTCGAACGTGTCTTCCGCACCAACATCTTCTCCTACTTCTTCAT GACCCGGCACGCGCTGAAGTACATGAAGGAAGGAAGCGCGATAATCAACACGACGTCGATCAACGCGTACAAGGGGAACGCGGAGCTGCTGGACTACACA TCGACGAAAGGCGCGATCGTGGCCTTCACAAGGGGGCTAGCTCTGCAGCTGGTGAATAAAGGGATTCGGGTCAACGGAGTGGCTCCGGGTCCGATATGGA CGCCGCTGATTCCGGCGTCGTTCAGGGAAGATAAGGTGACGAGCTTCGGGAAGCAGGTGCCCATGCAGAGAGCTGGACAGCCCAGCGAGGTGGCTCCTTC GTATGTGTTCCTGGCGTGTAACCATTGCTCGTCTTACATCACTGGGCAGGTGCTCCACCCCAATGGCGGAGTGGTGGTGAACGGTTGA
AA sequence Show only first row Show all	>Lus10029937 pacid=23159741 polypeptide=Lus10029937 locus=Lus10029937.g ID=Lus10029937.BGIv1.0 annot-version=v1.0 MASGGGDQTFPSQQQRDQPGKEHVMDPTPQFSNPDYKPSNKLQGKVALVTGGDSGIGRAVCHTFAMEGATVAFTYVKGKEDKDAQDTLQMLKKVKTPDAK DPIAIPGDLGFDENCRRAVEEVANAFGRIDILINNAAEQYECTTVEEIDEPRLERVFRTNIFSYFFMTRHALKYMKEGSAIINTTSINAYKGNAELLDYT STKGAIVAFTRGLALQLVNKGIRVNGVAPGPIWTPLIPASFREDKVTSFGKQVPMQRAGQPSEVAPSYVFLACNHCSSYITGQVLHPNGGVVVNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10029937 [exp]	0	1
AT4G28650			Leucine-rich repeat transmembr...		Lus10014243 [exp]	5.3	0.6894
AT2G21237			unknown protein		Lus10031077 [exp]	7.3	0.7128
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10042399 [exp]	12.2	0.6740
AT5G20140			SOUL heme-binding family prote...		Lus10035075 [exp]	14.0	0.6054
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	17.0	0.6479
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	30.9	0.6312
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10029877 [exp]	44.2	0.5585
AT1G06050			Protein of unknown function (D...		Lus10005308 [exp]	46.7	0.5687
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10027390 [exp]	53.3	0.6269
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	69.4	0.6156

Compare expression of checked genes

Lus10029937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.