Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01060 191 / 2e-54 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT2G46830 169 / 2e-46 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT5G17300 125 / 4e-32 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT1G18330 123 / 1e-31 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 122 / 2e-31 MYB Homeodomain-like superfamily protein (.1) AT5G37260 121 / 2e-31 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT5G52660 103 / 9e-25 MYB Homeodomain-like superfamily protein (.1.2) AT3G09600 102 / 1e-24 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT4G01280 101 / 4e-24 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 97 / 1e-22 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005134 [exp] 643 / 0 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 341 / 7e-111 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10012602 [exp] 293 / 2e-92 AT1G01060 341 / 7e-108 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10031322 [exp] 126 / 3e-32 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 125 / 7e-32 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10042292 [exp] 120 / 3e-30 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10026365 [exp] 119 / 7e-30 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 106 / 2e-25 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 106 / 2e-25 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180800 [exp] 324 / 7e-104 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.014G106800 [exp] 312 / 4e-99 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.004G074300 [exp] 129 / 1e-32 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.017G144800 [exp] 127 / 3e-32 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.012G038300 [exp] 125 / 1e-31 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 120 / 6e-30 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 103 / 1e-24 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 102 / 2e-24 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 103 / 3e-24 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 102 / 6e-24 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030184 pacid=23153038 polypeptide=Lus10030184 locus=Lus10030184.g ID=Lus10030184.BGIv1.0 annot-version=v1.0 ATGGACGCATTCTCATCCGGTGAAGACTTGCTTATCAAGACGAGAAAACCGTATACGATTACCAAGCAAAGGGAGCGATGGACCGATGAGGAGCACAATA GGTTCCTCGAGGCTCTGAAGCTCTATGGTCGAGCTTGGCAGAAAATAGAAGAACATATAGGGACAAAGACTGCCGTGCAGATTAGAAGTCATGCACAGAA ATTCTTCTCAAAGTTGGAGAAGGAAGCTGTAACGAAAGGTGTTCCAGTAGCACAGGCTCTTGACATTGATATTCCACCTCCACGTCCTAAGCGGAAGCCA AGCAATCCGTACCCCCGTAAAACAGGTGCCAGTTCGGTCACATCTCAGGCAGGAGCTAAGGAAGATGGAAAGCTTTCAACTTCGCTTCCCTTTCCTCCGA GCAAAGTATTGGACTTGGAGAAAGAACCACTTCCTGAGAAACCTAGTGGTGATGAGAAGTCCACAGGTGCCAAAGAAAACCATGATGAAAGTTGCTCAGA GGTCTTCACCAGCAGTTCCTCCATCTTCTCATTGAAGAAAAACTCCACACTGCAACCAGGAGGTCTGAGGAATCCATGCTCCTTCCGGGAGTTTGTACCT TGCCTGAAAGACGCGGTAAGTCAGGATGAGTCTCGTGTCACCACTGAGCTTGATGGAAATAAGAAGTGGCATAAACCAGAGCTCACACCAAAAGTCTATG ACAATGGCAGTAGTAAGGCCCCGCGTGGAAACTGCTGCCATTTGCTCAAGAAGTTACACCAACACAAGAACAACGCTGATGGAGATGCAATCATGGTCCC GGAAGACAAGATCCAAGCGATGCAGAACTGTCCTCGGCACGTACCGGTGCACATTCTAGATGGGAATGTTCCATCTAATGAATCAACGGTCCCTGTAGAA GAAAGTCACGCACGGTCTGATGTTTACTCACTTCCGACGGCATCTGCAGCTGAATTTCCGAACAATATGGCTGCATGTTCGACGAACCAATCATTTCCGC CTTTTCCTCATCCATTTGCACCAAGTCTCCATAATCAGGATGACTACAGGTCCTTCGTCCAGATGTCATCTGCGTTTTCGAGCCTCATTGCATCTAGTCT GCTACAAAATCCTGCTGCCCATGCAGCAGCAAGTTTCGCCGCCTCCTTTTGGCCCTATGCAAATGTCGGTAACCCCGCGGACTCTTCAACATGCACTTCC GGAGGATTTTCATCAAGAACAAAGCCCGGACAACCTTCCTCCTCCTAG
AA sequence Show only first row Show all	>Lus10030184 pacid=23153038 polypeptide=Lus10030184 locus=Lus10030184.g ID=Lus10030184.BGIv1.0 annot-version=v1.0 MDAFSSGEDLLIKTRKPYTITKQRERWTDEEHNRFLEALKLYGRAWQKIEEHIGTKTAVQIRSHAQKFFSKLEKEAVTKGVPVAQALDIDIPPPRPKRKP SNPYPRKTGASSVTSQAGAKEDGKLSTSLPFPPSKVLDLEKEPLPEKPSGDEKSTGAKENHDESCSEVFTSSSSIFSLKKNSTLQPGGLRNPCSFREFVP CLKDAVSQDESRVTTELDGNKKWHKPELTPKVYDNGSSKAPRGNCCHLLKKLHQHKNNADGDAIMVPEDKIQAMQNCPRHVPVHILDGNVPSNESTVPVE ESHARSDVYSLPTASAAEFPNNMAACSTNQSFPPFPHPFAPSLHNQDDYRSFVQMSSAFSSLIASSLLQNPAAHAAASFAASFWPYANVGNPADSSTCTS GGFSSRTKPGQPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	0	1
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	1.0	0.9895
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	1.4	0.9559
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	2.4	0.8891
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	5.3	0.8228
AT3G54500			unknown protein		Lus10024170 [exp]	5.5	0.8222
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	7.9	0.7722
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	8.0	0.7724
AT5G06980			unknown protein		Lus10026150 [exp]	8.1	0.8098
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	8.8	0.7897
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10039003 [exp]	9.9	0.7101

Compare expression of checked genes

Lus10030184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.