Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 595 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 261 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 256 / 4e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 249 / 8e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 248 / 5e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40010 243 / 2e-74 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT5G17730 240 / 1e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 239 / 8e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G18193 234 / 6e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 234 / 7e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005991 [exp] 949 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008834 [exp] 498 / 3e-173 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035073 [exp] 404 / 7e-140 AT2G46620 280 / 7e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022362 [exp] 390 / 2e-133 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 259 / 2e-80 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 250 / 2e-78 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 248 / 7e-76 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10024275 [exp] 244 / 9e-75 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004258 [exp] 243 / 8e-74 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102300 [exp] 660 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 660 / 0 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007800 [exp] 551 / 0 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G020800 [exp] 541 / 0 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 311 / 2e-100 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 310 / 9e-100 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 260 / 1e-80 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 256 / 3e-79 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 248 / 2e-76 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 244 / 3e-75 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10030220 pacid=23153131 polypeptide=Lus10030220 locus=Lus10030220.g ID=Lus10030220.BGIv1.0 annot-version=v1.0 ATGAAGATTATATACTGTTTCCTTGCGGCGTCCGCCGCTATTGCTCTGTTTTACCTCCTCCGCGTGGCTCTGTTCAAGACCGGACTGATTTACCTAACGA AGAAGTGGTGGAGAGTCGTGGAGGATCGGCTCCATGTCTACCAGTACTTCAAGGTTCCGGAATTCAGCGCCAAGGAGAACGAGCTTTACCGGAGAGTCAC TCTGTACCTGAATTCTCTGGAATCTATCGAGGATTCTGATTTCACCAATCTGTTTACAGGAAGAACCTCTAGCGATATCGTCCTCCGCCTCGATCCTAAT CAGGTGATTGATGATTATTTTCTCGGAGCGAGGGTTTCCTGGATTAACGGAGATGACGGCGGCGGAGGTGGTAGGACTTTGGTTTTGAAGGTTACGAGAG CTGACAAGCGGCGAATTCTCAGGCCTTATCTTCAGCATATCCACACCGTCTCGGACGAGCTTAACGAGAGGAAGAAGGATTTGAAGCTCTACATGAACGT AATCGAGAGACTCGGCGGAGGCGGCGGCAGTACAGATGATGCGAAAACCAGACGGCGGTGGAGTTCTGTCCCGTTCACTCATCCGTCGACGTTCGATACG ATTGCGATGGAATCAGATCTGAAAAGCAAGCTGAAGTCAGATCTGGAGTCGTTCCTCAGAGCCAAACAGTACTACCACCGCCTCGGCCGCGTTTGGAAGC GGAGCTACTTGTTGTACGGACCGTCAGGCACTGGAAAATCCAGCTTCGTCGCTGCCATGGCGAATTTCTTGAGATACGACGTCTACGAGATCGACCTCTC CAGAGTCAGGGACGATTCGGATCTAAAGGCGATCCTGCTTCAGACGATGAGCAGGTCAGTGATCGTGATCGAGGATCTCGATCGGTTTCTGACGGAGAAA TCAAAAGATTCAAAACCATCGGCCGTGACCTTGGCCGGTATGCTGAATTTCATGGACGGAGTTCTCAGCTCCTGCGCTTCGGAGGAGAGGATAATGGTGT TCACGATGAACAGCAAGGACGGAATCGAACCGGCGATCCTCCGACCAGGTCGGATCGACGTCCACATCCATTTCCCGCTCTGCGACTTCTCGTCGTTCAA GACTCTGGCGAGCAACTACTTAGGGTTAAAGGATCACAAGCTGTTCCCTCAGGTGGAGGAGATTTTCCAATCGGGTGCCAGCCTGAGCCCAGCAGAAATC GGAGAACTCATGATCGCGAATCGGAGTTCTCCGAGCCGGGCTCTAAAGCTGGTCATCACCGCCCTCCAGACCGAGGGTGACCGGAGGGGGTCGTTGAATA TAGGAATGGCAATGGGGTCGGGTCAGGAAGATTATCAGAGCGAACATTCGGGGATTTTCGGCAGGGAAGGTGCGGTGAATCCGATTAAGGACATTAGGAA GTTGTACGGGCTGTTGAAGATGAAAAGCAGCCGGAAATCGGAGTCCTTCGAGGTGAAGGGTGACTCGTCGGGGGTTATCGGAAACGGTGATCGGAGTTAG
AA sequence Show only first row Show all	>Lus10030220 pacid=23153131 polypeptide=Lus10030220 locus=Lus10030220.g ID=Lus10030220.BGIv1.0 annot-version=v1.0 MKIIYCFLAASAAIALFYLLRVALFKTGLIYLTKKWWRVVEDRLHVYQYFKVPEFSAKENELYRRVTLYLNSLESIEDSDFTNLFTGRTSSDIVLRLDPN QVIDDYFLGARVSWINGDDGGGGGRTLVLKVTRADKRRILRPYLQHIHTVSDELNERKKDLKLYMNVIERLGGGGGSTDDAKTRRRWSSVPFTHPSTFDT IAMESDLKSKLKSDLESFLRAKQYYHRLGRVWKRSYLLYGPSGTGKSSFVAAMANFLRYDVYEIDLSRVRDDSDLKAILLQTMSRSVIVIEDLDRFLTEK SKDSKPSAVTLAGMLNFMDGVLSSCASEERIMVFTMNSKDGIEPAILRPGRIDVHIHFPLCDFSSFKTLASNYLGLKDHKLFPQVEEIFQSGASLSPAEI GELMIANRSSPSRALKLVITALQTEGDRRGSLNIGMAMGSGQEDYQSEHSGIFGREGAVNPIKDIRKLYGLLKMKSSRKSESFEVKGDSSGVIGNGDRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	0	1
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	3.3	0.9164
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	3.7	0.9007
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	4.5	0.8951
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	5.8	0.8783
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	10.2	0.8818
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	10.8	0.8975
AT1G65720			unknown protein		Lus10031363 [exp]	15.9	0.8894
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	16.9	0.8803
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10010753 [exp]	17.2	0.8454
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	17.7	0.8653

Compare expression of checked genes

Lus10030220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.