Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46570 741 / 0 LAC6 laccase 6 (.1) AT5G05390 501 / 7e-173 LAC12 laccase 12 (.1) AT2G40370 491 / 2e-168 LAC5 laccase 5 (.1) AT5G60020 468 / 8e-160 LAC17, ATLAC17 laccase 17 (.1) AT5G03260 468 / 9e-160 LAC11 laccase 11 (.1) AT2G38080 467 / 1e-159 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT1G18140 464 / 5e-158 LAC1, ATLAC1 laccase 1 (.1) AT5G01190 459 / 3e-156 LAC10 laccase 10 (.1) AT2G30210 456 / 8e-155 LAC3 laccase 3 (.1) AT5G07130 446 / 6e-151 LAC13 laccase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005976 [exp] 1008 / 0 AT2G46570 774 / 0.0 laccase 6 (.1) Lus10017427 [exp] 476 / 2e-162 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10017175 [exp] 473 / 2e-162 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10034614 [exp] 473 / 9e-162 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10034439 [exp] 469 / 3e-160 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10019122 [exp] 469 / 5e-160 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10035517 [exp] 468 / 1e-159 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10035546 [exp] 467 / 3e-159 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10018208 [exp] 465 / 1e-158 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100600 [exp] 921 / 0 AT2G46570 831 / 0.0 laccase 6 (.1) Potri.010G183500 [exp] 495 / 3e-170 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073700 [exp] 491 / 1e-168 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 491 / 2e-168 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073800 [exp] 490 / 3e-168 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.016G112000 [exp] 485 / 1e-166 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 483 / 1e-165 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 479 / 4e-164 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 476 / 4e-163 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G087500 [exp] 476 / 6e-163 AT5G60020 806 / 0.0 laccase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10030235 pacid=23153198 polypeptide=Lus10030235 locus=Lus10030235.g ID=Lus10030235.BGIv1.0 annot-version=v1.0 ATGTTGCTCAAGCTAGCTGTTTGTGCCCTGTTGTGGCTAACCATAGTAATCTCCTCAGCTTATTCAGCTACTAGACAATGGCCTCGAGGGTCGACAACAC GCTTCTACGACTTCAAGATACAAACAATGAGGGTGAACAAACTGTGCAGCTCGAACGAGATCGTCACGGTCAATAACATGTTCCCAGGTCCGGTTGTCTA TGCTGAAGAAGGCGACCGGTTGATCGTTAAAGTCGCGAACTTGTCTCCCTACAATACCACCATCCACTGGCATGGTGTAAGACAGATACTATCTTGCTGG TCCGACGGGCCTTCGTACATAACTCAGTGTCCGATAACTCCGGGGCAGAGCTTCACCTATGAGTTCACAATGGTGAAGCAAAAGGGAACCTTCTTTTGGC ATGCACATGTGTCTTGGCTTAGGGCAACTGTTTATGGTGCCCTTATAGTGTATCCAAAGCCAGGGGTGCCCTATCCTTTTCCATTCCCATATGAAGAGCA CATCATAATCCTAGGCGAATACTGGAACCAGGATATAGTGCAACTCGAACGTCGAGTCGTCGCAAGCGGAGGAGGTGCACCGCCGGCTGATGCATATACC ATCAATGGTCACCCTGGCCCCAACTACAATTGCTCTGCCAATGATGTATACAAGCTGGACGTCGTCCCAGGGAGGACATACTTACTAAGACTGATCAACG CAGGGTTAAACACAGAAAACTTCTTCGCCATCGCCAACCACAAACTAACAATAGTAGAAGCAGATGCAGAGTACACAAAGCCATTCACAACTGACCGAGT GATGCTCGGACCGGGCCAGACACTGATCGTCCTCGTCAAGGCCGACCAGCCCATCGGAAAATATTCCATGGCCGTCGGACCATACATCTCGGCCCAAAAT CTTCCCTTTCAAAACATAACATCGGTCGCCTACTTCCAGTACTCTGGAGCTACGCCCAACAGCTTATCACTGCCGGCCAGGCAACTGCCAAACGCCAACG ATAATTTCGCGGTGAAGACAGTAATGGACGGTCTGAAAGGGCTCAACACGACGGATTTTGTTCCTAAGGAGATCGACACCACACTTTTCGTCACCATCGG GTTGAACATCAACAAATGCCGCTCCAAAACACCACAAACAAACTGCCAGGGATATAGAAATGGAATCATGGCGGCTTCGATGAACAATATTAGTTTCGTT AAGCCGACTGTTTCGCTTTTGGAAGCTTACTACAAGGGGATTGAAGATTATTTCACCCACGACTTTCCAGCTGCGCCGCTAAAGTTTTACGACTTTGTGA ACGGAGCGCCTAACAATCCACCTAACGACACAAGCTCGATGAACGGGACTAGAACCAAGGTGATTGAGTACGGAGCCAGGGTGCAAATGATCTTGCAGGA TACCGGGACGATTTCGACTGAAAATCATCCGATTCATCTTCATGGCTACAGTTTCTATGTTGTGGGATATGGGAGTGGAAACTACAATCCCCAAACGGCT AACCTCAATTTGTTCGACCCGCCGTACATGAACACGATTGGAGTTCCAGTAGGCGGCTGGGCTGCTATCAGATTCAAGGCTGATAATCCAGGTGTTTGGT TCATCCATTGTCACTTTGATGTGCATCAATCATGGGGATTGGCTACAGCTCTGATAGTTAAGAATGGGGTTGGCCACTTAGAGACACTTCCCCATCCTCC TGCAGATCTCCCTCGCTGCTAG
AA sequence Show only first row Show all	>Lus10030235 pacid=23153198 polypeptide=Lus10030235 locus=Lus10030235.g ID=Lus10030235.BGIv1.0 annot-version=v1.0 MLLKLAVCALLWLTIVISSAYSATRQWPRGSTTRFYDFKIQTMRVNKLCSSNEIVTVNNMFPGPVVYAEEGDRLIVKVANLSPYNTTIHWHGVRQILSCW SDGPSYITQCPITPGQSFTYEFTMVKQKGTFFWHAHVSWLRATVYGALIVYPKPGVPYPFPFPYEEHIIILGEYWNQDIVQLERRVVASGGGAPPADAYT INGHPGPNYNCSANDVYKLDVVPGRTYLLRLINAGLNTENFFAIANHKLTIVEADAEYTKPFTTDRVMLGPGQTLIVLVKADQPIGKYSMAVGPYISAQN LPFQNITSVAYFQYSGATPNSLSLPARQLPNANDNFAVKTVMDGLKGLNTTDFVPKEIDTTLFVTIGLNINKCRSKTPQTNCQGYRNGIMAASMNNISFV KPTVSLLEAYYKGIEDYFTHDFPAAPLKFYDFVNGAPNNPPNDTSSMNGTRTKVIEYGARVQMILQDTGTISTENHPIHLHGYSFYVVGYGSGNYNPQTA NLNLFDPPYMNTIGVPVGGWAAIRFKADNPGVWFIHCHFDVHQSWGLATALIVKNGVGHLETLPHPPADLPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46570		LAC6	laccase 6 (.1)		Lus10030235 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	12.3	0.7972
					Lus10028109 [exp]	19.1	0.7607
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	22.8	0.7104
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	26.0	0.7062
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10040101 [exp]	36.9	0.6903
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	38.9	0.7253
					Lus10039764 [exp]	40.6	0.7331
AT4G18220			Drug/metabolite transporter su...		Lus10028132 [exp]	41.8	0.6956
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	44.1	0.7003
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	45.7	0.6966

Compare expression of checked genes

Lus10030235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.