Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13550 724 / 0 SULTR4;1 sulfate transporter 4.1 (.1) AT3G12520 722 / 0 SULTR4;2 sulfate transporter 4;2 (.1.2) AT1G23090 261 / 1e-78 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 192 / 8e-53 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 184 / 3e-50 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT4G08620 178 / 6e-48 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT5G19600 174 / 1e-46 SULTR3;5 sulfate transporter 3;5 (.1) AT1G78000 169 / 1e-44 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT1G22150 168 / 2e-44 SULTR1;3 sulfate transporter 1;3 (.1) AT3G15990 158 / 6e-41 SULTR3;4 sulfate transporter 3;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003294 [exp] 992 / 0 AT5G13550 674 / 0.0 sulfate transporter 4.1 (.1) Lus10023440 [exp] 902 / 0 AT5G13550 955 / 0.0 sulfate transporter 4.1 (.1) Lus10040319 [exp] 891 / 0 AT5G13550 962 / 0.0 sulfate transporter 4.1 (.1) Lus10041111 [exp] 201 / 8e-56 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 198 / 9e-55 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10014706 [exp] 193 / 1e-53 AT3G51895 804 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 186 / 2e-50 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 181 / 6e-49 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 182 / 7e-49 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049500 [exp] 840 / 0 AT5G13550 921 / 0.0 sulfate transporter 4.1 (.1) Potri.010G211400 [exp] 814 / 0 AT5G13550 898 / 0.0 sulfate transporter 4.1 (.1) Potri.005G213500 [exp] 273 / 8e-83 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.005G167300 [exp] 199 / 2e-55 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 184 / 6e-50 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 184 / 6e-50 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 181 / 4e-49 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 177 / 1e-47 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 170 / 4e-45 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.006G156038 [exp] 164 / 6e-43 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10030321 pacid=23153162 polypeptide=Lus10030321 locus=Lus10030321.g ID=Lus10030321.BGIv1.0 annot-version=v1.0 ATGCCAAACACCGCCGTCTCCCGACCTGTGAAGATCATTCCTCTTCAGCACCCCTCCGTCGGCACAACCTCCTCTTCTTCCACTTCTCCGTCCACTTTCT TTTCCGGTCTGCTCACCAAATGGAAACGCCTCACCTTCCTCCAATTCATCGAGTGCCTCTTCCCTTGTTCCCGATGGATTCGAACCTACAGATGGCGCCA AGATTTTCAGGTCGATCTCGTCGCCGGTCTCACCATCGGCGTCATGCTTGTCCCCCAGGCCATGTCATATGCAAAATTAGCAGGACTTGAACCAATTTAT GGACTGTACACTGGATTTGTCCCAATTTTTGTCTACGCCGTATTTGGATCATCTCGGCAACTGGCGATTGGCCCAGTTGCCCTGGTTTCTCTGCTGGTAT CTAATGTTCTGAGGGGGATTGCTGGTTCTTCCGATGAGCTGTACACTGAGCTTGCGATTGTATTGGCTCTTATGGTAGGAATACTGGAGTGCATTATGGG GCTTCTGAGGCTAGGATGGCTTTTACGATTCATCAGCCACTCTGTTATTTCTGGCTTTACAACTGCTTCAGCTTTTGTTATTGGGCTATCACAAGCAAAG TATTTTTTGGGATACAATATCACACAAAGTAGCAAAATTGTGCCACTGATTAAAAGCATAATAGCTGGAGCAGACAAGTTCTCATGGCCTCCTTTCGTGA TGGGATCTGGCATTGTTGCTGTACTCCTTATTATGAAGCACTTGATAGGAGAGATACCACAGGGTCTCCCTAGCTTTGCAGTTCCAAAGAATTTTGGGTA TGCAAAATCTCTCATTCCAACAGCATTTCTTATTACTGGTGTAGCCATATTGTTGGTTGGTCTTGGTTTAGCAAATATCTTCGGCTCTTTCTTCTCTTCA TATCCCTCAACAGGTTCCTTTTCCAGGTCAGCTGTTAGCAATGAGAGTGGGGCTAAAACTGGTTTGTCTGGAATCATTACTGGAATTGTCATGGGCTGTG CTCTTTTATTCTTGACTCCATTATTTGAGTTCATACCCCAGTGTGCGCTGGCTGCAATAGTTGTTTCTGCCGTAATTGGCTTGGTTGAATACGAGGAGGC AATCTTCTTGTGGCGTGTTGATAAGAAAGATTTTCTTCTTTGGATCATTACTTGCACCATGACTTTGTTCCTTGGGATCGAGATTGGTGTTCTTGTAGGG GTAGGTGTCTCACTTGCCTTTGTCATCCATGAATCTGCAAATCCGCATATTGCTGTCTTGGGTCGACTCCCTGGCACCACTGTGTATAGAAATATTCAAC AATACCCGGAAGCATACACTTACCATGGAATTGTCATTGTTCGCATCGATGCTCCTATCTATTTTGCAAATACAAGCTTTATAAAAGACAGACTGCGAGA TTATGAAGTTAGTGTAGACACATCAGCCCGTCGTGGGCCAGAAGTCGAAAGGATATACTTTGTGATTTTAGAGATGTCCCCTGTCACGTACATAGACTCC AGTGCCATCCAAGCTCTGAAAGACTTGCACCTAGAGTACAAGTCGCGGGATATCCAGATAGCTATTTCAAATCCAAACCGAGAAGTCCTACTGACACTCT CAAAAGCTGGCATTGTGGAACTCATCGGCAAGGAATGGTACTTTGTACGAGTACATGATGCAGTCCAGATATGCCTTCAGCACGTCCAGAGCTTGCACCA AACTCCCGATACTACATTAGCTGAAACCAAACCCAATTTGCTGGAACGATTGTTAAAACAGAGAGGAGATGATTCACCAGCGTCTGACTTAGAATCTGGG AAGAGAAGTGTGGTTGCTTCGAGGAGCAACGATCCTAATCTGGTGCCATTGTTGCCCCCCCATAGATTCAATCCTGAGGAATAA
AA sequence Show only first row Show all	>Lus10030321 pacid=23153162 polypeptide=Lus10030321 locus=Lus10030321.g ID=Lus10030321.BGIv1.0 annot-version=v1.0 MPNTAVSRPVKIIPLQHPSVGTTSSSSTSPSTFFSGLLTKWKRLTFLQFIECLFPCSRWIRTYRWRQDFQVDLVAGLTIGVMLVPQAMSYAKLAGLEPIY GLYTGFVPIFVYAVFGSSRQLAIGPVALVSLLVSNVLRGIAGSSDELYTELAIVLALMVGILECIMGLLRLGWLLRFISHSVISGFTTASAFVIGLSQAK YFLGYNITQSSKIVPLIKSIIAGADKFSWPPFVMGSGIVAVLLIMKHLIGEIPQGLPSFAVPKNFGYAKSLIPTAFLITGVAILLVGLGLANIFGSFFSS YPSTGSFSRSAVSNESGAKTGLSGIITGIVMGCALLFLTPLFEFIPQCALAAIVVSAVIGLVEYEEAIFLWRVDKKDFLLWIITCTMTLFLGIEIGVLVG VGVSLAFVIHESANPHIAVLGRLPGTTVYRNIQQYPEAYTYHGIVIVRIDAPIYFANTSFIKDRLRDYEVSVDTSARRGPEVERIYFVILEMSPVTYIDS SAIQALKDLHLEYKSRDIQIAISNPNREVLLTLSKAGIVELIGKEWYFVRVHDAVQICLQHVQSLHQTPDTTLAETKPNLLERLLKQRGDDSPASDLESG KRSVVASRSNDPNLVPLLPPHRFNPEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10030321 [exp]	0	1
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10003294 [exp]	12.1	0.8928
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Lus10009574 [exp]	18.6	0.9258
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	20.3	0.9320
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	25.1	0.9236
AT2G47800		EST3, ATMRP4, A...	ATP-binding cassette C4, multi...		Lus10011498 [exp]	29.2	0.8777
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	32.4	0.9199
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	34.3	0.8873
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10037476 [exp]	41.2	0.9253
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10024915 [exp]	44.5	0.9145
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10038013 [exp]	44.5	0.8986

Compare expression of checked genes

Lus10030321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.