Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 233 / 2e-74 MYB ATMYB73 myb domain protein 73 (.1) AT5G67300 227 / 3e-72 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT2G23290 212 / 3e-66 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 194 / 2e-59 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 156 / 4e-44 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 154 / 2e-43 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 148 / 4e-41 MYB ATMYB25 myb domain protein 25 (.1) AT3G09370 137 / 3e-36 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT1G69560 134 / 4e-36 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 132 / 5e-36 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010260 [exp] 441 / 1e-155 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10010238 [exp] 216 / 8e-68 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 207 / 1e-64 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10014103 [exp] 186 / 4e-57 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10032764 [exp] 174 / 2e-52 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10021762 [exp] 174 / 4e-52 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10040940 [exp] 172 / 4e-52 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 171 / 4e-51 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10028979 [exp] 166 / 1e-49 AT4G37260 181 / 1e-55 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048900 [exp] 275 / 2e-90 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 272 / 3e-89 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 224 / 2e-71 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 216 / 6e-68 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.009G096000 [exp] 189 / 1e-58 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.001G300200 [exp] 179 / 2e-54 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.014G035100 [exp] 174 / 2e-52 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.002G128900 [exp] 171 / 1e-51 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.008G070900 [exp] 170 / 7e-51 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.008G062700 [exp] 159 / 7e-45 AT3G55730 290 / 7e-95 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030336 pacid=23153159 polypeptide=Lus10030336 locus=Lus10030336.g ID=Lus10030336.BGIv1.0 annot-version=v1.0 ATGGCATTTACCGGTAAGGAAATTGATCGGATCAAAGGTCCATGGAGCCCCGATGAAGACGAGAAGCTCCACAACCTCGTGGACAAGCACGGCCCTCGCA ACTGGTCATTGATCAGCAAATCGATCCCCGGCCGTTCCGGCAAATCCTGCCGTCTCCGATGGTGTAATCAGCTCTCTCCTCAGGTTGAGCACCGCGCCTT TACTGTCGAAGAAGACGACACCATTATCCGAGCCCATGCCAGGTTCGGCAACAAGTGGGCAACTATCGCCCGACTCCTCCACGGCCGCACCGACAACGCC ATCAAGAACCACTGGAACTCTACGCTCAAGCGCAAGTGCTCTTCATCGTCCCAAGACGTTGGCGGTGGTGACCAAGGATACGATGGTAATTTGGGAGATT GTTGCCAGCCTTTGAAGAGGTCGATGAGTGCGGGATCTGGTCTGCCCGTTTCAACGGGGCTTACCATGAACCCTGCCAGTCCATCTGGATCTGACGTCAG CGACTCTTCCAGCGTGCCAAATCCACCTCCCCCGCCACCTGTTTTGTTACCGCCTCCACCTCCTCCTCCTCCTCCTCCTGCTAGTACTAGTACATCATCG CACGTGTTCAGGCCCGTGCCCAGAACAGGAGGCGTAGCTCCTCCTCCCGAAACCAAGTTGTCAAACAATAGAAACGACGATGACCTGGCTACTTCACTAA GTCTTTCTCTTCCAGGCACCGATTCCTCCTCCGAGGTCTCAACTCCGCGAGTTCCCGAGGCCGCTCATCTACATCAGAAGCAGCAGCAGCGGAATAAACC TGTTGTTGCCGTTACGTTGCCTCCTTTGCCAGCGATGAACCGTCCCGTGTCAATGGACATTCAGGCTCCGTCGGAAATGGGGGCGGAGTTCATGTCGGTG ATACAAGATATGATAAAGATGGAGGTGAGGAGTTACATGATGGAACAGAGACGAGGCGTAGCTGGAGGAGGAGGAAACGGGGGTGGTGGTGGGATGTGTT TTCAGGCGGCAGGAGGGAGTGGGTTTAAGAATGTTGTAGCAGTGAAGAGAGTCGGGGGTTGGGAAAATTGA
AA sequence Show only first row Show all	>Lus10030336 pacid=23153159 polypeptide=Lus10030336 locus=Lus10030336.g ID=Lus10030336.BGIv1.0 annot-version=v1.0 MAFTGKEIDRIKGPWSPDEDEKLHNLVDKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTVEEDDTIIRAHARFGNKWATIARLLHGRTDNA IKNHWNSTLKRKCSSSSQDVGGGDQGYDGNLGDCCQPLKRSMSAGSGLPVSTGLTMNPASPSGSDVSDSSSVPNPPPPPPVLLPPPPPPPPPPASTSTSS HVFRPVPRTGGVAPPPETKLSNNRNDDDLATSLSLSLPGTDSSSEVSTPRVPEAAHLHQKQQQRNKPVVAVTLPPLPAMNRPVSMDIQAPSEMGAEFMSV IQDMIKMEVRSYMMEQRRGVAGGGGNGGGGGMCFQAAGGSGFKNVVAVKRVGGWEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	3.5	0.8902
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	4.6	0.9010
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	4.9	0.8686
AT1G22750			unknown protein		Lus10028718 [exp]	6.0	0.8920
AT3G47070			unknown protein		Lus10040689 [exp]	6.3	0.8928
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	9.2	0.8409
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	10.2	0.8804
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	12.7	0.8647
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	15.7	0.8675
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	16.7	0.8219

Compare expression of checked genes

Lus10030336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.