Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 483 / 7e-151 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 439 / 1e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 421 / 9e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 400 / 3e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 398 / 3e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46450 394 / 2e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 384 / 1e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 383 / 2e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 380 / 4e-115 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G11250 381 / 3e-114 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041078 [exp] 1318 / 0 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 558 / 2e-180 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 550 / 3e-177 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 536 / 6e-173 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 477 / 4e-149 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10038249 [exp] 463 / 6e-146 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012246 [exp] 444 / 4e-141 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 437 / 6e-135 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 436 / 6e-134 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 651 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 643 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 596 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 589 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 588 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 550 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 539 / 2e-170 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 521 / 3e-169 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 523 / 5e-167 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 520 / 2e-166 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10030345 pacid=23153027 polypeptide=Lus10030345 locus=Lus10030345.g ID=Lus10030345.BGIv1.0 annot-version=v1.0 ATGGCGCAGCAGAACCACCAATTCGACGTCTTCCTCAGCTTCCGCGGAGACACTCGCGACGATGGCTTCACCAGCCATCTCTACGCCGCGCTTCTCCGCC ATAATGTCGCCGCCTACATGGACGCGGTCAGCCTCGAGAGAGGCGAGCAGGTCTCCCCCTCGCTCCTGGCGGCCATCACGAGGTCCAAAGTCTGCGTCGT CGTTTTGTCCCAGAACTACGCGGATTCCGCTTGGTGCCTTGACGAGATCACTGAAATAATTGCCGAGAGCAGACGGGAGCCAGCAGCAGGGGAGAAGAAG AGGAGGATGGCGGTTGTGCCCGTGTTTTACCGGGTCGAACCGGCGGATGTGACGGATCAGTTAGGGAGCTATGCGGAAGCGTTCGAGAAACATGAGACTG TGTATGAGAAGGAGAAGGTGGAGCGGTGGAGATATGCGCTCAAGGAAATTGGAAATCTCTCCGGCTGGGATTCACTTGTCACCAGGCCGGAGTCGAAACT GGTGGACGAAGTAGTGAACGATGTTTTGTACAAATTACACGAGCGATGTCCTCCACCGAGTCAAGACACGGGTTTGGTCGGAATGGACTCTCGAATCCAG CAAGTCGAATCCTTACTACACCTGGACCTCCCAAATGACGATGAAGTTCTTACCATAGGAATATGGGGAATGGGTGGTATTGGTAAGACTACTCTTGCTA GAACGATATTTGACCAATTGTCCCCACAATTCGAGGGCAGTGTTTTCCTCGAGAATGTCCAGGAGCAACTGAGGAAAAGTAAGACCATACTTTTCTTAAG AGAGGAACTCATACGCCAGATTTTAGAGAGCAGGACAGTAGCAACTGATAACCCCAACACAAAGCTCGAGTTCGTTCGCGATAGGCTCCGTCGCAGAAAA GTTCTCGTTGTTATCGACGACGTTAATGACTTGATACAGCTTCAGGACATATTGGGTGGGAGTCATCAGTTTGGTCCAGGAAGTAGAATCATTGTCACGG GAAGAGATAAGCATGTACTTGGCATTGTGGCTGACCAAATTTACGAGGTCAAGTCATTGAACCAACGTGAAGCTCTCCAGCTTTTCTGCTTGAATGCCTT TCGAAATGGCCATTCGTTGAAGGATGGTGATATAGAGCTGTCTAATAAATTTGCGGATTATGCCAGTGGGAATCCCCTGGCTTTAAGAGTTTTGGGGTTG TCTCTTTTGGGAAGAAGCAGAGAAGATTGGAAGAGTAAAATGAAGAGGCTGGGTAGAATCTCCAATCCTGATATCCAAAGTGTATTGAGAGTAAGCTATG ACAGTTTGGATCATGAGGAGCAGAGTGTGTTTCTCGACATTGCTTGCTTCTTCCGAGGCGAAGATCGAGATCACGTGATCAAAGTGTTGGATGCTTGTCA CTCTTCTGTACGTATCATAATAACAACTCTGGTGGATAAGTCTTTGGCAACGGTTTCTAGCAGCAACACTTTGGAAATGCATGATTTGGTACAAGAACTG GGTTGGGGCATTGTACATCAAGAGCTGGAGCCAGGACAACGTACCAAGGTGTGGACTCCTAAGGATATTTTCCAAATTTTAACGAACAAAAAGGCGAGTG CCTCGATTGAAGGATTGTTCTTAAACTTGTCCAAGGCTAAAGAGATGCATTTGGAAGGTGATTCATTTGCAAGTATGGATCGACTTAGATTGCTCAAGTT TCATCGTCCTGATTACAAACCAGATGTTTGTAAGGTGCATCTTCCTTGTCATGGCCTCGAATCTATGTCGGATGAGCTCGCACTTTTCCACTGGCATGGA TTCCCTTGTAAATCCTTTCCTCCCAACTTTTGTGCCGAAAATTTAGTCGAGCTCATACTGCCTTTCAGTAAGGTCACACATCTCTGGACAGGAGTTCAGA ATCTTGGAAACTTGAGGTTGATCGACCTGGAAGGGTCCAAGAATTTGAAGGAGATTCCAGACTTGTCAGAGGCAGAAAATCTCGAGACAGTAGTTCTCGA CGGATGTGAAATACTATTCGAGCTTCCTTTGTATTTCCAAAATCATCTCAAGCTGGTTGGCCTCTATCTCAGAAACTGCAAAAACATCAAATATCTCCCC ATAAAATTGGACTCGCAACAACTCAAGCATTTAAATTTATCATGCTGCTCAAAGGTTTCAACCTGCCCAGAAGTGTCAACGAGGTGCCTGCAGGAATTAA ATCTAAGCAGAACAGCAATCAGGGAACTCCCCACTTCAATTTCCAGACTGAGAGTTCCAAAAGTGCTGAACTTGGAAGGCTGCTCAAATGTCACGAGCTT CCCAGTGATCAGTGGGGGAGTGAAGAAGTTGTTGCTAAGTGGGACTGCCATTAAGGAAGTTTCTTCAACGTCAGTGGATCATCTTTTGGATCTGGAAGAA TTTCGGATGACGAATAATAAAGCTCTGACCAGCTTTGGAGCTGATCTCGGTAAGTTGAGATGTTTGAAGCTTGTTGATTTGTCGGGGTGTTCCAATCTCG AGTACTTCAGAGACATGTGTGCTGGAAATCCATTATTGGATCGCGGAATTCGGCTTCATGGATGCAAGAATCTCTCCAAGAAATGTACCAGTTACAGTAG GGAATTTGATTTGGCACTAAGGGATCATGGCAGTTATGGAAAGTGTTTGGAGAGGGAGCGAGGGAAGCCAGTTCAGTGGCGAGATCGGGTGGTTGCACAG TGGAAAACACTTTCAAGGATGAGATGGAATAGAATTCTGTTCGTTTTCAGAAAAGAGGATCTTTCTGAACTGCCTTCTGATACAACTTCTACTACGAATG ATGATGAAGATCCATTCTTCATTGATGCTATGGTTGGTAAGAGCGTAAGAAACAAACTATTCACTACTCAAGAAATAACAAACAAACTATTCACTCAAGA AATGATGATCATGAACACCACAGCAGCAGCAAATGCAATGCTGGTAATGGCCTTATTCGCCATCACTTTCTCTTCCGCCTTCGCTGCTAGATCTCTCGCC GAAACCCTTGCCACTTCATCCCTAACCCCACTTCCCGTTCTCGATGTGGACGGGAAAGTGGTCCGGTCAGAAACCACTTATTACGCTATCCCAACAACTA GTGGGGAAAATGGTCTGGTCGATGACTTCAATGATGACGTCGAGCAGTAG
AA sequence Show only first row Show all	>Lus10030345 pacid=23153027 polypeptide=Lus10030345 locus=Lus10030345.g ID=Lus10030345.BGIv1.0 annot-version=v1.0 MAQQNHQFDVFLSFRGDTRDDGFTSHLYAALLRHNVAAYMDAVSLERGEQVSPSLLAAITRSKVCVVVLSQNYADSAWCLDEITEIIAESRREPAAGEKK RRMAVVPVFYRVEPADVTDQLGSYAEAFEKHETVYEKEKVERWRYALKEIGNLSGWDSLVTRPESKLVDEVVNDVLYKLHERCPPPSQDTGLVGMDSRIQ QVESLLHLDLPNDDEVLTIGIWGMGGIGKTTLARTIFDQLSPQFEGSVFLENVQEQLRKSKTILFLREELIRQILESRTVATDNPNTKLEFVRDRLRRRK VLVVIDDVNDLIQLQDILGGSHQFGPGSRIIVTGRDKHVLGIVADQIYEVKSLNQREALQLFCLNAFRNGHSLKDGDIELSNKFADYASGNPLALRVLGL SLLGRSREDWKSKMKRLGRISNPDIQSVLRVSYDSLDHEEQSVFLDIACFFRGEDRDHVIKVLDACHSSVRIIITTLVDKSLATVSSSNTLEMHDLVQEL GWGIVHQELEPGQRTKVWTPKDIFQILTNKKASASIEGLFLNLSKAKEMHLEGDSFASMDRLRLLKFHRPDYKPDVCKVHLPCHGLESMSDELALFHWHG FPCKSFPPNFCAENLVELILPFSKVTHLWTGVQNLGNLRLIDLEGSKNLKEIPDLSEAENLETVVLDGCEILFELPLYFQNHLKLVGLYLRNCKNIKYLP IKLDSQQLKHLNLSCCSKVSTCPEVSTRCLQELNLSRTAIRELPTSISRLRVPKVLNLEGCSNVTSFPVISGGVKKLLLSGTAIKEVSSTSVDHLLDLEE FRMTNNKALTSFGADLGKLRCLKLVDLSGCSNLEYFRDMCAGNPLLDRGIRLHGCKNLSKKCTSYSREFDLALRDHGSYGKCLERERGKPVQWRDRVVAQ WKTLSRMRWNRILFVFRKEDLSELPSDTTSTTNDDEDPFFIDAMVGKSVRNKLFTTQEITNKLFTQEMMIMNTTAAANAMLVMALFAITFSSAFAARSLA ETLATSSLTPLPVLDVDGKVVRSETTYYAIPTTSGENGLVDDFNDDVEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10030345 [exp]	0	1
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10021780 [exp]	4.1	0.8958
AT3G11760			unknown protein		Lus10021254 [exp]	6.8	0.8843
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	7.5	0.8721
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	10.7	0.7822
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	11.0	0.8836
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	12.2	0.7955
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	15.5	0.7989
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	16.0	0.8699
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	18.3	0.8631
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	18.7	0.8663

Compare expression of checked genes

Lus10030345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.