Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 89 / 5e-20 AP2_ERF RAP2.11 related to AP2 11 (.1) AT4G23750 70 / 5e-13 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G72360 67 / 3e-12 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G25190 63 / 1e-11 AP2_ERF ESE3 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) AT4G27950 64 / 3e-11 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G11140 63 / 4e-11 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT5G18560 63 / 6e-11 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G12980 62 / 2e-10 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT5G53290 62 / 2e-10 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT2G33710 60 / 2e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036793 [exp] 179 / 9e-52 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 178 / 2e-51 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10012703 [exp] 125 / 3e-32 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10001298 [exp] 95 / 2e-23 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10013614 [exp] 89 / 8e-20 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10010652 [exp] 89 / 1e-19 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10036556 [exp] 81 / 2e-18 AT5G19790 104 / 2e-28 related to AP2 11 (.1) Lus10041372 [exp] 80 / 5e-18 AT5G19790 102 / 1e-27 related to AP2 11 (.1) Lus10008291 [exp] 83 / 3e-17 AT5G19790 106 / 3e-26 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087800 [exp] 142 / 7e-39 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 131 / 1e-34 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.013G056700 [exp] 91 / 1e-20 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.003G220200 [exp] 89 / 3e-20 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.019G036100 [exp] 88 / 1e-19 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.001G453100 [exp] 86 / 2e-18 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.001G004700 [exp] 84 / 4e-18 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.011G148900 [exp] 81 / 6e-17 AT5G19790 65 / 5e-12 related to AP2 11 (.1) Potri.014G076702 [exp] 80 / 9e-17 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 79 / 1e-16 AT5G19790 79 / 6e-17 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10030430 pacid=23140665 polypeptide=Lus10030430 locus=Lus10030430.g ID=Lus10030430.BGIv1.0 annot-version=v1.0 ATGAAAAGGAAGAAACCTGATGATCCTAATAACACCTCTGACGATGACGGCTCGATTCACAAGCTGATGATGGAGGAGGTAGCAGCTCTCGCCGGAGCAG CCAGACCCCAAAAGCGATTTGTCGGCATAAGACAACGACCATCGGGGAGATGGGTAGCGGAGATCAAGGACACGGTCCAGAAGATCAGAGTGTGGTTGGG CACTTACAACACAGCGGAGGAAGCCGCTAGAGCCTACGATGAGGCTGCATGCCTCCTCCGCGGGGCCAACACCCGGACCAATTTTTTATCCGGCCCCACC CAGGGCCGGCCCACGCCGACTCTCCCTCCCAAGACCGCCAATCGCTTGCTCCAAAGGCTCAAAGCTAGGAGCGTGGATTTATTAGCGAGTGAAAGCCTGC ATTGCGCACCAAACGACGGTGTCGCGGCACCAAACCTAACGACTGAAGCCGTCGCTAATGTTAGTAATAAGGACAAAATTAATTATGGCAGTCATAGTAG CATCGGAAACGACATCGTTTTGGCGGCAAACTCGACGTACACCGTTGCTAATCCGACAGATAAGACGACAGAGATGGAGACAAGAAACAACGTGGGCTGT TGTTTGACGGCCACGATCGATTTCGGCCAGCTCGTTGACGGTCCAGATTACTCCTCCTCGTCATCCGGTGGTTTTGGTAGCGTCGATTTATCGATGACGA CGACAACAAGGCCAGGATATTGTTCGGCATTGGATATTGCACATGAGATGACGATGGATCCGTTTTTGAAGCAATCGAAAGAGGAAGATGATAATGATCG TTCCGATCACGATTGTGAGGCGATTGAGGGGATGAGCGAGATGAGTAAGCGGCTCAGCTACGAGAGGAAGTTCTCCGCATCGTTGTACGCCTACAACGGT GTCGCCGAGTGTTTGAGCAGGATGGTCGGTGTAAATAGTACTAATAATGACGACATTAGTAGTGACAGTTATAACTATGACTGTCCTCAAATGTCATCGG CATGTTCTTCGTTGTCGTCGTTCAACGGAGGAGAAGATGAGGAGTTGTCCCTGTGGAGCTCACTCGATTTTCCTTCCCAATACTTCTCCATCTAG
AA sequence Show only first row Show all	>Lus10030430 pacid=23140665 polypeptide=Lus10030430 locus=Lus10030430.g ID=Lus10030430.BGIv1.0 annot-version=v1.0 MKRKKPDDPNNTSDDDGSIHKLMMEEVAALAGAARPQKRFVGIRQRPSGRWVAEIKDTVQKIRVWLGTYNTAEEAARAYDEAACLLRGANTRTNFLSGPT QGRPTPTLPPKTANRLLQRLKARSVDLLASESLHCAPNDGVAAPNLTTEAVANVSNKDKINYGSHSSIGNDIVLAANSTYTVANPTDKTTEMETRNNVGC CLTATIDFGQLVDGPDYSSSSSGGFGSVDLSMTTTTRPGYCSALDIAHEMTMDPFLKQSKEEDDNDRSDHDCEAIEGMSEMSKRLSYERKFSASLYAYNG VAECLSRMVGVNSTNNDDISSDSYNYDCPQMSSACSSLSSFNGGEDEELSLWSSLDFPSQYFSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	11.3	0.7442
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Lus10035999 [exp]	14.4	0.6958
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	18.0	0.7434
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	20.3	0.7070
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	23.3	0.6780
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	31.3	0.6779
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010190 [exp]	33.8	0.7313
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	41.6	0.7005
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	44.9	0.7052
AT2G39300			unknown protein		Lus10019883 [exp]	52.5	0.6980

Compare expression of checked genes

Lus10030430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.