Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15310 170 / 6e-54 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 170 / 3e-53 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT4G21440 160 / 9e-50 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 157 / 5e-49 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 155 / 9e-48 MYB ATMYB93 myb domain protein 93 (.1) AT4G05100 154 / 1e-47 MYB ATMYB74 myb domain protein 74 (.1) AT5G60890 152 / 2e-47 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT5G16770 153 / 3e-47 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 145 / 5e-45 MYB ATMYB41 myb domain protein 41 (.1) AT3G61250 145 / 9e-45 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026620 [exp] 179 / 6e-58 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10033003 [exp] 174 / 5e-55 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10039743 [exp] 144 / 6e-45 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 147 / 7e-45 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 146 / 1e-44 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10003557 [exp] 145 / 2e-44 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10041142 [exp] 145 / 3e-44 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10033889 [exp] 144 / 4e-44 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10036472 [exp] 144 / 6e-44 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086300 [exp] 177 / 4e-56 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 176 / 7e-56 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.008G089700 [exp] 169 / 4e-53 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2) Potri.008G089200 [exp] 167 / 2e-52 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.005G224100 [exp] 153 / 5e-48 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.004G033100 [exp] 155 / 8e-48 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 155 / 1e-47 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 154 / 1e-47 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.019G118200 [exp] 152 / 9e-47 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.008G166700 [exp] 149 / 2e-46 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030442 pacid=23140750 polypeptide=Lus10030442 locus=Lus10030442.g ID=Lus10030442.BGIv1.0 annot-version=v1.0 ATGGTGAGGTCTCCCTGCTGTCAGAAAGTAGGGTTGAAGAAAGGGCCATGGACACCTGAAGAAGACCAGAAGCTCTTGGCTTACATTGAGAGGCATGGCC ATGGCAGCTGGAGAGCTCTCCCTGCAAAAGCTGGGCTCCAAAGATGTGGGAAAAGTTGCAGGCTTAGGTGGACCAATTACCTTAGGCCCGACATCAAAAG AGGAAAGTTCAGTCTCCAAGAGGAGCCGACTATTATCCAACTCCATGCCCTTCTCGGGACCAGGTCCGTCTAG
AA sequence Show only first row Show all	>Lus10030442 pacid=23140750 polypeptide=Lus10030442 locus=Lus10030442.g ID=Lus10030442.BGIv1.0 annot-version=v1.0 MVRSPCCQKVGLKKGPWTPEEDQKLLAYIERHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEPTIIQLHALLGTRSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	0	1
					Lus10039495 [exp]	1.4	0.9165
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031478 [exp]	2.0	0.8871
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	5.5	0.8703
AT5G20610			unknown protein		Lus10025003 [exp]	7.7	0.8552
AT5G01740			Nuclear transport factor 2 (NT...		Lus10022755 [exp]	8.5	0.7528
					Lus10008327 [exp]	8.7	0.8552
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	9.5	0.8552
					Lus10010697 [exp]	10.2	0.8552
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	11.0	0.8552
					Lus10008920 [exp]	11.4	0.8295

Compare expression of checked genes

Lus10030442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.