Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69560 237 / 9e-76 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 231 / 6e-74 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT3G29020 200 / 1e-62 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G17800 199 / 5e-61 MYB ATMYB56 myb domain protein 56 (.1) AT1G17950 190 / 1e-58 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G73410 181 / 3e-55 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT4G33450 177 / 3e-53 MYB ATMYB69 myb domain protein 69 (.1) AT5G39700 150 / 5e-44 MYB ATMYB89 myb domain protein 89 (.1) AT2G39880 138 / 3e-37 MYB ATMYB25 myb domain protein 25 (.1) AT5G67300 134 / 2e-36 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026611 [exp] 488 / 2e-173 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 201 / 1e-61 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10029746 [exp] 193 / 9e-59 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10018936 [exp] 190 / 1e-57 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031900 [exp] 191 / 2e-57 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10028638 [exp] 188 / 4e-57 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10031326 [exp] 189 / 6e-57 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10020309 [exp] 138 / 5e-38 AT1G69560 140 / 3e-39 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10010260 [exp] 138 / 2e-37 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088000 [exp] 261 / 2e-83 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 253 / 4e-80 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 234 / 5e-73 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.019G040900 [exp] 224 / 7e-70 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) Potri.013G067000 [exp] 207 / 3e-63 AT5G17800 189 / 6e-57 myb domain protein 56 (.1) Potri.015G033600 [exp] 201 / 7e-63 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.012G039400 [exp] 201 / 8e-63 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.005G186400 [exp] 193 / 1e-58 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.002G073500 [exp] 191 / 8e-58 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.007G106100 [exp] 189 / 1e-57 AT4G33450 207 / 2e-66 myb domain protein 69 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030452 pacid=23140557 polypeptide=Lus10030452 locus=Lus10030452.g ID=Lus10030452.BGIv1.0 annot-version=v1.0 ATGAAGCCATGGCCTGCAACTGAAGCTCATACTTGTTCTTCACCAATGGTGGCAATGGTGAATGCAGACATTGCTTCACTCACTCTCTCATCACCCTCCC CTGCATCTCTTTTCCCTTCTGACTGTACCACCACCACCACCTCCAATGAAGAAGATAACAACATAAAGGAGACTACTTTAGTACTGACAGAATGTGGACA GTCAAAGCTTTGTGCCAGAGGACATTGGAGGCCAGCTGAGGATTCAAAGCTCAAGGAGCTTGTTTCCCTTTATGGCCCTCAGAATTGGAACCTCATTGCT GAGAAATTGGAAGGCAGATCAGGGAAAAGTTGCAGATTGAGGTGGTTTAACCAGCTGGATCCAAGGATAAACAGGAGGGCATTCAGTGAAGATGAGGAAG AGAGGCTGATGCAGGCTCATAGGGTGTATGGTAACAAGTGGGCTATGATTGCTAGGCTTTTTCCAGGGAGGACTGACAATGCTGTGAAGAACCATTGGCA TGTTATAATGGCTAGGAAGTACAGAGAGCAGTCTAGTGCTTACAGGAGGAGGAAGCTTAGTAACTCAAATGGTGGTGGTACTGGTGGAAGTTGCAGCAAC AACAGTGGTGGTGGGGATAGTGGTAGTTACAACACTTGTTCTTCATCTCCTCCTTCTTCAAGAATGGATGAAATGATGATGATGATCCCAACAGCAAACT TGTTCCATAACCAGAATCTTGGAGATCAGCAGCATCACTTCATTAATGGTGGGAGAGGAATAATCAAAGGAGGAGGTGGCTTTGTTGTTCCTCACCAGCA GACAACCTTTGATTTCTTTCCTGGTGGGAAGAGCAGCAGCAATGAGATGATGATAATGGGGATGCTGAGCCAGAGCAGATCTTGCTGGGATCATCATCAA TATCAAAGCAATGGTAACAACAACAACAACAACAACTTGGCAATGCAACAGTCAAATTACTCCTTAAACCAAAGGATTCATCATCCAACTCATCATCAAA TGGTGATTTCTTCATCTTCATCTTCATTTGGAGATCATCAAGAGAGATCATCATCATCAGCTGTAGTTAGCAGTAGCAGTAACAATCCACCACCATTCAT TGACTTTCTTGGAGTAGGAGCCACTTGA
AA sequence Show only first row Show all	>Lus10030452 pacid=23140557 polypeptide=Lus10030452 locus=Lus10030452.g ID=Lus10030452.BGIv1.0 annot-version=v1.0 MKPWPATEAHTCSSPMVAMVNADIASLTLSSPSPASLFPSDCTTTTTSNEEDNNIKETTLVLTECGQSKLCARGHWRPAEDSKLKELVSLYGPQNWNLIA EKLEGRSGKSCRLRWFNQLDPRINRRAFSEDEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLSNSNGGGTGGSCSN NSGGGDSGSYNTCSSSPPSSRMDEMMMMIPTANLFHNQNLGDQQHHFINGGRGIIKGGGGFVVPHQQTTFDFFPGGKSSSNEMMIMGMLSQSRSCWDHHQ YQSNGNNNNNNNLAMQQSNYSLNQRIHHPTHHQMVISSSSSSFGDHQERSSSSAVVSSSSNNPPPFIDFLGVGAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	0	1
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	1.0	0.9845
AT2G14660			unknown protein		Lus10033766 [exp]	10.4	0.9036
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	13.5	0.8616
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	14.5	0.9151
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	16.6	0.9301
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038607 [exp]	18.4	0.8658
AT4G10810			unknown protein		Lus10010114 [exp]	20.0	0.8826
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	24.2	0.9217
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	24.3	0.9216
AT4G28100			unknown protein		Lus10018524 [exp]	26.2	0.8815

Compare expression of checked genes

Lus10030452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.