Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15240 340 / 1e-113 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 336 / 2e-112 Transmembrane amino acid transporter family protein (.1) AT2G39130 297 / 1e-95 Transmembrane amino acid transporter family protein (.1) AT2G41190 294 / 2e-94 Transmembrane amino acid transporter family protein (.1) AT3G54830 280 / 6e-89 Transmembrane amino acid transporter family protein (.1) AT5G02180 280 / 1e-88 Transmembrane amino acid transporter family protein (.1) AT5G02170 270 / 5e-85 Transmembrane amino acid transporter family protein (.1.2) AT3G09340 256 / 9e-80 Transmembrane amino acid transporter family protein (.1) AT3G09330 254 / 3e-79 Transmembrane amino acid transporter family protein (.1) AT5G16740 174 / 1e-49 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012824 [exp] 672 / 0 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 344 / 3e-115 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10023029 [exp] 335 / 7e-113 AT3G28960 280 / 6e-92 Transmembrane amino acid transporter family protein (.1) Lus10030683 [exp] 331 / 4e-110 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 282 / 3e-89 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 262 / 3e-81 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 260 / 1e-76 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10010855 [exp] 249 / 6e-76 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10038702 [exp] 207 / 8e-62 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086500 [exp] 496 / 3e-175 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 496 / 5e-175 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 359 / 3e-121 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 352 / 3e-118 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.018G099700 [exp] 306 / 9e-101 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 300 / 2e-96 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 284 / 2e-90 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 272 / 9e-86 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 252 / 2e-79 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 180 / 2e-51 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10030469 pacid=23140728 polypeptide=Lus10030469 locus=Lus10030469.g ID=Lus10030469.BGIv1.0 annot-version=v1.0 ATGGAGTGCCAAAAGGGAGCAACAATGGAGGTAGAGAGCCAAACCCATGATGAGGATCATGATAAACCCAAAGGCACAAGCTTCCTTAGGACTTGCTTCA ATGGGCTCAATGCGCTTTCAGGGGTTGGGATTTTGTCGATCCCGTTTGCGCTTTTGCAAGGAGGGTGGCTCAGCCTGGCAATACTCCTTCTGGTAGCTTC TCTTTGCTTCTACACGGCTTTGCTCTTGAGGCGTTGCATGGACACGGATGTGCTCATCAAGACGTATCCTGACATTGGCTATCAAGCCTTCGGGTCTCAA GGAAAGGCTCTTGTGTCGATCTTTTTGTATTTGGAACTCTACCTTGTCGCGGTGGAGTTCTTGATACTCGAAGGGGACAACTTGGACAAGTTGTTTCCCA ACACAAGGTTTAAGCTTTTTTGTGGCATTGAACTTGGTGGCAAAGAGGCATTTGTCTTGCTTTCTGGTCTTATGATTCTCCCAACAACTTGGCTAAGAAG CTTGGGAGTTATGGCTTATGTTTCAATTGGTGGAGTTGTGGCTTCAATTGTTTTGGTTGTTTGTGTCTTTTGGGTTGGAGCAGTTGATGATGTTGGGTTC CATGAAAATGGACAAATCCTTAGATGGGAAGGATTGCCAACTGCCATAAGTTTGTTCACTTTTTGTTACTGTGGTCACGCTGTTTTCCCAACTTTGTGCA ACTCAATGAAGGACAAGACCCAATTCTCCAAGGAAAAACAGATACAATTGTTTTACTCGCGGTTATGTCATCGTTGTTTGCTCACTTTACGACATGTTTT GCTTGTTTGCTTCATGGTGACCACATTCACATACGGCTCGATGGCGGTCATGGGGTACCTGATGTTCGGAGACCGGCTAAACTCACAAGTGACGTTAAAC CTCCCTATCTCGAAACTCAGCTCCAAGATTGCGATCTACACCACGTTGGTGAACCCCGTGACCAAGTACACGGTGATCATCGCTCCGATCACGAGTGCGG TGGAGGAGAAGTTTAGGTTCCGGGACAACCGACTTCTCAGCATCCTTTCCAGGACGGGGATCGTGGTCAGCACGGTGATCGTGGCCATAACTGTACCCTT CTTCGGCTACGTGATGGCATTCATCGGGTCGTCGTTGACCGTGCTCGCGGCACTCATTTTGCCGTGTTTGTGCTACATTAGGATTACCAGATCGGATAAG AGGTACAAGTTCGAGCTTGCGTTTATTGTGGGGATTTTGATCTTTGGGGTTGTTGTTGGGATAGTGGGGACTTATACTTCCATTAGACAAATAGTGAAAC ATATGTAA
AA sequence Show only first row Show all	>Lus10030469 pacid=23140728 polypeptide=Lus10030469 locus=Lus10030469.g ID=Lus10030469.BGIv1.0 annot-version=v1.0 MECQKGATMEVESQTHDEDHDKPKGTSFLRTCFNGLNALSGVGILSIPFALLQGGWLSLAILLLVASLCFYTALLLRRCMDTDVLIKTYPDIGYQAFGSQ GKALVSIFLYLELYLVAVEFLILEGDNLDKLFPNTRFKLFCGIELGGKEAFVLLSGLMILPTTWLRSLGVMAYVSIGGVVASIVLVVCVFWVGAVDDVGF HENGQILRWEGLPTAISLFTFCYCGHAVFPTLCNSMKDKTQFSKEKQIQLFYSRLCHRCLLTLRHVLLVCFMVTTFTYGSMAVMGYLMFGDRLNSQVTLN LPISKLSSKIAIYTTLVNPVTKYTVIIAPITSAVEEKFRFRDNRLLSILSRTGIVVSTVIVAITVPFFGYVMAFIGSSLTVLAALILPCLCYIRITRSDK RYKFELAFIVGILIFGVVVGIVGTYTSIRQIVKHM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	0	1
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	1.0	0.9250
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10016928 [exp]	1.4	0.8729
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	2.4	0.7910
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10039609 [exp]	4.5	0.8174
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	5.5	0.8283
AT1G06980			unknown protein		Lus10038171 [exp]	7.4	0.8064
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	10.4	0.7747
AT5G44150			unknown protein		Lus10035461 [exp]	12.1	0.6658
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	17.3	0.7889
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	17.4	0.7788

Compare expression of checked genes

Lus10030469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.