Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02820 432 / 1e-148 MYB ATMYB88 myb domain protein 88 (.1.2) AT1G14350 394 / 5e-134 MYB FLP, AtMYB124 FOUR LIPS, myb domain protein 124, Duplicated homeodomain-like superfamily protein (.1.2) AT3G27785 102 / 2e-23 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT3G09370 101 / 5e-23 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G58850 100 / 6e-23 MYB ATMYB119 myb domain protein 119 (.1) AT2G25230 96 / 2e-22 MYB ATMYB100 myb domain protein 100 (.1) AT5G02320 99 / 6e-22 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11050 97 / 1e-21 MYB ATMYB64 myb domain protein 64 (.1) AT5G40360 96 / 2e-21 MYB ATMYB115 myb domain protein 115 (.1) AT5G11510 96 / 1e-20 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012847 [exp] 731 / 0 AT2G02820 447 / 3e-154 myb domain protein 88 (.1.2) Lus10036728 [exp] 223 / 8e-70 AT2G02820 166 / 2e-48 myb domain protein 88 (.1.2) Lus10037202 [exp] 221 / 4e-69 AT2G02820 168 / 1e-48 myb domain protein 88 (.1.2) Lus10025351 [exp] 102 / 3e-23 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 100 / 1e-22 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 98 / 6e-22 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10022256 [exp] 96 / 3e-21 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10013084 [exp] 95 / 3e-21 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10011687 [exp] 97 / 6e-21 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148400 [exp] 514 / 0 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.010G093000 [exp] 499 / 5e-175 AT2G02820 470 / 4e-163 myb domain protein 88 (.1.2) Potri.006G085600 [exp] 107 / 1e-24 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.012G082000 [exp] 98 / 5e-22 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.014G079300 [exp] 97 / 2e-21 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G241700 [exp] 97 / 3e-21 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.003G123800 [exp] 96 / 3e-21 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.018G038000 [exp] 96 / 1e-20 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.001G347200 [exp] 94 / 1e-20 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.008G122100 [exp] 92 / 1e-20 AT1G68320 274 / 1e-91 myb domain protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030494 pacid=23140563 polypeptide=Lus10030494 locus=Lus10030494.g ID=Lus10030494.BGIv1.0 annot-version=v1.0 ATGGAAGAAGATAAGAAGAAGAAGATGATGATCAATGGTGGTGGTGGTGGTGGTGGTAGTGGGAGTGAAGAATCTACTAAGAAGAAGGAGAGGCATATTG TCTCATGGAGTTCTGAGGAAGATGATATACTTCGTCAGCAGATAAGCTTACATGGAACTGAGAACTGGGCGATCATAGCATCAAAGTTCAATGATAAAAC AACAAGACAGTGTAGAAGGAGATGGTTTACATACTTGAATTCCGATTTCAAGAAAGGCGGCTGGTCACCAGAGGAAGACTTGCTCTTGTGCGAGGCTCAA AGGATATTTGGTAACAGATGGACAGAGATTGCAAAGGTTGTTTCAGGCAGAACGGATAATGCAGTTAAGAATCGGTTCACAACTCTGTGCAAGAAGAGAG CAAAGTACGAAGCTTTAGCGAAAGAGAACGAAAAAGGTGGATGCATCAATGCAAACAACAAAAGGGTATTATTGGATCGCAAGTTGAACGCTGCCGGAAG TACAGAAAATGCAACAGCTGCTAAGAGAATAAGGAGGTCTCACATCCCGAGTCGAATGGAGAATCAAAACTTTGGAGACAGATCTCACCCCAAGTCTAGA ACTCAACAGCTTAGACCTCCATTCATGGTGCTGCCTCCGGAAGTGCATAAAGTTAACGGTGGAAGCCAGCCGCCGGTTGACAATGAAAACGACATCTCTT CTGATGAACTTCTGAGCACACTGGCATCGAAAGTCAATTCGGAGAGTACAGACCAGAGTCTTGAACATGCTTGGAAAGTTCTTCAGAATTTCTTGAAAAG CGGCAAAGGAGATGAGGTCACAAGTTATGCACTTCCTGACACTGATTTCCAGCTGGAGGATTTCAAAGACTTGATGGAAGATTTAAGCAGCAGTGATGGA AGCCATTCGTCTTGGAGGCAACCTGATTTATATGAAGCATCTCCAGCAAGCTCCGAATTCAGTTCCGGCTCCAGTCTCATATCATACTCAGCACCTGATG CAACAGAACAACCTCAAGGTGAAATTGATATGCTGCAGAATGATATCGAAACTGATTTGCAAATAGTGCCCATCGAAGGACAAAACGGCATAGGTGAATG TGACAACAAGATTGTGTCCGACGACAACATAGCCGAAGGGGACCTGTTTCCATCCTTCAATGAACAAACAAGCGATGGCATCGTTGTTTCTGCTTCATCA AATACAAAGTTCGGCTCCCCTCATCAAGTTACCCCGCTATTCGGATCCTTGGCAGTCGGGATACCTAGTCCCCAATTCTCCGAAAGTGAACGTAGATTCC TACTAAAAACTCTTGGAGTGGAGTCTCCTTTTGCCAATCCAACCACCAACACCTCCCAACAACCACCCTGCAAAAGAGTCCTTCTCCAAAGTCTATGA
AA sequence Show only first row Show all	>Lus10030494 pacid=23140563 polypeptide=Lus10030494 locus=Lus10030494.g ID=Lus10030494.BGIv1.0 annot-version=v1.0 MEEDKKKKMMINGGGGGGGSGSEESTKKKERHIVSWSSEEDDILRQQISLHGTENWAIIASKFNDKTTRQCRRRWFTYLNSDFKKGGWSPEEDLLLCEAQ RIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENEKGGCINANNKRVLLDRKLNAAGSTENATAAKRIRRSHIPSRMENQNFGDRSHPKSR TQQLRPPFMVLPPEVHKVNGGSQPPVDNENDISSDELLSTLASKVNSESTDQSLEHAWKVLQNFLKSGKGDEVTSYALPDTDFQLEDFKDLMEDLSSSDG SHSSWRQPDLYEASPASSEFSSGSSLISYSAPDATEQPQGEIDMLQNDIETDLQIVPIEGQNGIGECDNKIVSDDNIAEGDLFPSFNEQTSDGIVVSASS NTKFGSPHQVTPLFGSLAVGIPSPQFSESERRFLLKTLGVESPFANPTTNTSQQPPCKRVLLQSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10030494 [exp]	0	1
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10012847 [exp]	3.7	0.8096
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10012927 [exp]	10.2	0.7921
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10034999 [exp]	15.1	0.7808
AT3G17940			Galactose mutarotase-like supe...		Lus10026181 [exp]	21.5	0.7204
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	23.7	0.7652
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	24.7	0.7811
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	27.6	0.7608
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	27.7	0.7473
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	35.9	0.7009
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	35.9	0.7608

Compare expression of checked genes

Lus10030494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.