Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40540 1196 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 919 / 0 Potassium transporter family protein (.1) AT1G70300 907 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT3G02050 750 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 709 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 699 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT2G35060 637 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT4G19960 631 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT1G60160 619 / 0 Potassium transporter family protein (.1) AT4G13420 615 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034215 [exp] 1368 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10030857 [exp] 963 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 953 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 877 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 813 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10012888 [exp] 719 / 0 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 638 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10029050 [exp] 624 / 0 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10013304 [exp] 616 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056500 [exp] 1251 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 1236 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 935 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 928 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.014G144900 [exp] 819 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 798 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 756 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 716 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1) Potri.003G148200 [exp] 707 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.012G043501 [exp] 698 / 0 AT2G40540 726 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10030539 pacid=23140722 polypeptide=Lus10030539 locus=Lus10030539.g ID=Lus10030539.BGIv1.0 annot-version=v1.0 ATGTCCCAGCTCGGAGTAGGAGCAGTCGATTCGGGGGTTTCCAAGATGTCACAGGGTCCAAAGGATTCTTGGAAGACACTGTTGATACTGGCTTATCAGA GCCTTGGTGTAGTCTATGGGGACCTTAGCATATCTCCCTTGTATGTTTTCAAGAGCACATTTGCGGACGATATCCAGCATTCTCAAAGCAACGATGAGAT TTACGGGGTTCTGTCGTTCGTGTTCTGGACACTCACTCTGGTCCCCTTGTTCAAGTATGTGTTCATTGTTCTCAGAGCTGATGACAATGGAGAGGGTGGT ACTTTCGCGCTGTATTCTCTACTTTGCCGGCATGCCAAAGTTAGCCTTCTTCCGAACCGGCAGGTCTCAGATGAATCATTGTCCACTTATATCCTCGAAC ATCCCCCGGAAAAGAAGAATTTCTGCCCCAAAACTTTCCTTGAGAAGCATAAGGGCTTGCACACTGCTTTGTTGATCTTGGTTCTTCTCGGCACTTGTAT GGTTATTGGTGATGGACTCCTCACTCCGGCCATTTCGGTTTTCACTGCGGTATCTGGACTCGAGTTGTCGATGGAGAAACATCAATATGCAGTTATTCCA ATCACTTGCTTCACCTTGGTGTGCCTCTTTTCACTCCAACATTACGGCACTCATCGCGTGGGGTTCTTATTTGCGCCGGTCATCCTGCTGTGGTTGTTCT GCATAAGCGCCCTCGGGATCTACAATATACTCTACTGGAACGTCCATGTGTATCGAGCTCTTTCCCCGTGCTACATGTACAAGTTCTTGAAGAAAACAAA GAAATCCGGGTGGATGTCTTTGGGTGGAATATTATTGTGCATCACAGGATCGGAGGCGATGTTTGCTGATCTTGGACACTTCTCATACACTGCAATTCAG ATTGCTTTCAGTTTTCTGGTTTATCCAGCGCTCATACTTGCTTATATGGGTCAAGCTGCGTACTTGTCGCAACATCACGGCAATGCTAGTGATATCAGCT TTTATATCTTTGTTCCAGAAAAGCTCAGACTCCCTGTACTCCTACTTGCCATTCTCGCTTCCGTTGTGGGAAGCCAAGCTATCATCAGCGGCACCTTCTC CATCATAAACCAGAGCCAATCTCTAAGCTGTTTCCCAAGGGTGAAGGTGGTTCACACTTCTGACAAGATCCACGGCCAAATCTACATCCCTGAGATCAAT TGGATTCTCATGATCCTCTGCATTGCAGTCACCATCGGATTTCGAGACACCAAGCATATCGGAAATGCATCAGGATTGGCTGTGATGACTGTAATGCTGG TAACTACTTGTCTCACTTCCTTGGTCATTATGCTGTGCTGGCACAAGCCACCGATTTTAGCACTCGGATTTCTACTCTTCTTCGGCTCAATCGAGTTGCT GTACTTCTCGGCTTCGCTAACCAAGTTCCGAGAAGGCGCCTGGCTCCCGATCCTCATGGCACTCATCCTCGTCACCATCATGCTGATCTGGCATTACGCC ACGATAAAAAAATACGAGTACGACTTGCACAACAAGGTATCGTTAGACTGGCTACTAGCTCTCGGACCGAGCTTGGGAGTCGCTAGAGTTCCCGGCATTG GCTTGATCTTCAACGATCTCACCTCAGGAATACCGGCCAACTTCTCTCGCTTCGTGACCAACCTCCCTGCCTACCACCGGATCCTCGTCTTCGTATGCGT GAAGTCAGTCACGGTCCCTCACGTCCCGCCAGACGAGAGGTATCTCGTCGGGCGTGTCGGTCCGCCTCAGCATCGGTCATATAGGTGCATTGTGCGGTAT GGATACCGCGATGTGCATCAGGATGTCGACTCGTTCGAGTCTCAGCTTGTCGCCAAGCTAGCAGACTTTGTCAGATTCGACTGGCACCGAGCAGCAACAA ATGGCCAGTGTTCCTCCCCAGACGATGATGAAGCACCACGTTCGGTCGCATCATCGAACGAATGCAGGTTAACCGTGATAGGAACCATGTCGTTTGGTGG CAACCCGGCCTACGAGGTGGACGACACAATGCACGCAGCGAGTGTCTCGGTGGGGATTAGGACGGTAGATAGTTTGACCGATGTTATAGAGATGGAACCA GTCGATAATACAACATCAAGGAGAGTAAGGTTTAGTAGTACGGTGGATGATGATTCGGAATCTCAGATGGAGGAAGAGTTGAGGGATCTGTTGACTGCGC AGGAGGCCGGGACTGCGTTCATACTGGGCCACTCGCATGTTCAAGCGAAGCAAGGGTCGTCGATCCTAAAGAAGCTGGCTATCGATTTCGGGTATAACTT CATGAGGAAGAACTGTAGAGGACCGGATGTGGCGCTGAAAGTGCCTCCGGTTTCACTCTTGGAGGTCGGAATGGTGTACATTGTGTGA
AA sequence Show only first row Show all	>Lus10030539 pacid=23140722 polypeptide=Lus10030539 locus=Lus10030539.g ID=Lus10030539.BGIv1.0 annot-version=v1.0 MSQLGVGAVDSGVSKMSQGPKDSWKTLLILAYQSLGVVYGDLSISPLYVFKSTFADDIQHSQSNDEIYGVLSFVFWTLTLVPLFKYVFIVLRADDNGEGG TFALYSLLCRHAKVSLLPNRQVSDESLSTYILEHPPEKKNFCPKTFLEKHKGLHTALLILVLLGTCMVIGDGLLTPAISVFTAVSGLELSMEKHQYAVIP ITCFTLVCLFSLQHYGTHRVGFLFAPVILLWLFCISALGIYNILYWNVHVYRALSPCYMYKFLKKTKKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQ IAFSFLVYPALILAYMGQAAYLSQHHGNASDISFYIFVPEKLRLPVLLLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQIYIPEIN WILMILCIAVTIGFRDTKHIGNASGLAVMTVMLVTTCLTSLVIMLCWHKPPILALGFLLFFGSIELLYFSASLTKFREGAWLPILMALILVTIMLIWHYA TIKKYEYDLHNKVSLDWLLALGPSLGVARVPGIGLIFNDLTSGIPANFSRFVTNLPAYHRILVFVCVKSVTVPHVPPDERYLVGRVGPPQHRSYRCIVRY GYRDVHQDVDSFESQLVAKLADFVRFDWHRAATNGQCSSPDDDEAPRSVASSNECRLTVIGTMSFGGNPAYEVDDTMHAASVSVGIRTVDSLTDVIEMEP VDNTTSRRVRFSSTVDDDSESQMEEELRDLLTAQEAGTAFILGHSHVQAKQGSSILKKLAIDFGYNFMRKNCRGPDVALKVPPVSLLEVGMVYIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	0	1
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10033222 [exp]	1.4	0.7719
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	3.2	0.7902
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	6.0	0.7358
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	7.7	0.7284
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	13.3	0.7358
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	24.2	0.7519
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	26.5	0.7373
AT3G27520			unknown protein		Lus10003664 [exp]	30.4	0.7119
AT1G28530			unknown protein		Lus10015294 [exp]	34.4	0.7356
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	50.0	0.6624

Compare expression of checked genes

Lus10030539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.