Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 483 / 2e-167 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 454 / 2e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 452 / 6e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 432 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28600 410 / 2e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 402 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 393 / 6e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 384 / 3e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 382 / 5e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 313 / 4e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005256 [exp] 848 / 0 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 670 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 562 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 480 / 2e-166 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 470 / 1e-162 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 439 / 6e-150 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 423 / 1e-143 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014497 [exp] 399 / 2e-134 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 393 / 2e-132 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091500 [exp] 509 / 1e-177 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 498 / 6e-174 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 498 / 6e-174 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 485 / 1e-168 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 463 / 4e-160 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 462 / 2e-159 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 462 / 8e-159 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 453 / 2e-155 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 447 / 1e-153 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 339 / 2e-113 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10030667 pacid=23155175 polypeptide=Lus10030667 locus=Lus10030667.g ID=Lus10030667.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTGAAGCTATGTACAAACCTAGGCTCGTCAATCCTCGGCCTAATAGTAGCTTGGAACATGCTCGAAAAATATCTCCCGGACCAACTCCGGG GACTCTTCTCCAAATACACACAAACCCTCTTCGTCTTCTTCAACCCCTACATCCGGATCAGATTTCCCGAATTCACTTCAGGGAGTCGTTTCCGGAGGAA CGAGGCCTACATCATGATCCACAACTACCTTAGCCTACACTCCTCCTCCTTCTCCTCTTCGGCCAAATCATTAAAGGCCGACGCGTTGAAAAAAGACGGA AACACCCTCCAATTCTCGATCGACGAGGGCGAGGAGGTCGCCGACGAGTTTCTTGGCGTTAAAGTCTGGTGGACCCTCCGTACGTCCAGCGCGAAACAGC AGTCCATTAACCTCTACGGCCCGACCGACGACGAGAAGAGGTCGTACTTGCTGACTTTCCACAAGAGGGACAGGGGTTTTGTGACCGGTGAGTATATGGG TCGGGTGATGGAGGCCGGGAGGGCAATTGTGTCAAGTAATAGGCAGAGGAAGCTGTACTCGAATAACCCGACGCGGAATTGGAGCGGGTGGAGCTCCGTT CCGTTCGAGCACCCGGCGAGTTTCGACACTCTGGCGATGCCGTTGAAGAAGAAAGAGGGGATTAAGAAGGATTTGGTTAAGTTTAGCCAGGGGAAGAGCT ACTATGCTAAGATTGGCAAACCGTGGAAGCGTGGGTATCTGCTCTACGGCCCGCCGGGAACGGGGAAGTCCACGATGATAGCAGCAATAGCCAACTTCCT AAACTACGACATCTACAACCTGGAGCTAACCACCGTGAAGGACAACTCCGAGCTCATCAAGCTCCTCCTCGAAACCACCGGAAAATCCATCATCGTAATC GAGGACATCGACTGCTCCCTCGACCTCACCGGCCAGAGGAATCCCAAAACGAAAAACAAGAAGAAGAAGGATAACAACGAAGACGACAGCGACGACGAGG ATGATGATAACTACTCAGTCTCCAAAGCATTGAAAAAAGCACAAGAGAGCAACATGTCACCATGTGACAGCAAGGTGACACTATCGGGACTTTTAAATTT TATCGACGGGATATGGTCGGCGTGCGGAGGGGAAAGGATCATAATCTTCACGACCAACTACTTCGACAAGCTGGATCCAGCGTTAACAAGAAGAGGGAGG ATGGACATGCACATTGAGATGTCCTACTGCTGCTTCGAGGCGTTTAAGGTGTTGGCCAAGAACTACTTGGACATCGACGACACGCATAGGTTATTCGGGA GGGTCGAGGAGCTCCTGTCGGCAGTTAAGGTAACCCCGGCGAGCGTGGCAGAGAATCTGCTGCCTAAATCGGTGGAGGAAAGCGAGGAAAGGAGTTTGAG AAATTTGGTTGATGCTCTTGAGGCTTTGAAGGAAAAAGAAGATGGGAAGTTGAAGGATGCTAGGAGGGAGAGGCTTTGGGGATGGGCTAAGACTGTTTTT TCTTAG
AA sequence Show only first row Show all	>Lus10030667 pacid=23155175 polypeptide=Lus10030667 locus=Lus10030667.g ID=Lus10030667.BGIv1.0 annot-version=v1.0 MEALKLCTNLGSSILGLIVAWNMLEKYLPDQLRGLFSKYTQTLFVFFNPYIRIRFPEFTSGSRFRRNEAYIMIHNYLSLHSSSFSSSAKSLKADALKKDG NTLQFSIDEGEEVADEFLGVKVWWTLRTSSAKQQSINLYGPTDDEKRSYLLTFHKRDRGFVTGEYMGRVMEAGRAIVSSNRQRKLYSNNPTRNWSGWSSV PFEHPASFDTLAMPLKKKEGIKKDLVKFSQGKSYYAKIGKPWKRGYLLYGPPGTGKSTMIAAIANFLNYDIYNLELTTVKDNSELIKLLLETTGKSIIVI EDIDCSLDLTGQRNPKTKNKKKKDNNEDDSDDEDDDNYSVSKALKKAQESNMSPCDSKVTLSGLLNFIDGIWSACGGERIIIFTTNYFDKLDPALTRRGR MDMHIEMSYCCFEAFKVLAKNYLDIDDTHRLFGRVEELLSAVKVTPASVAENLLPKSVEESEERSLRNLVDALEALKEKEDGKLKDARRERLWGWAKTVF S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10030667 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	2.8	0.8376
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	6.3	0.8345
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	9.4	0.7651
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	9.8	0.8158
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	14.1	0.7998
					Lus10024821 [exp]	15.7	0.8090
AT5G16110			unknown protein		Lus10028474 [exp]	16.3	0.8326
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	20.2	0.8089
AT5G16110			unknown protein		Lus10009170 [exp]	20.8	0.7958
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	24.9	0.7849

Compare expression of checked genes

Lus10030667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.