Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54320 247 / 3e-77 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G79700 234 / 9e-74 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G16060 234 / 2e-73 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT5G17430 230 / 3e-69 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 229 / 5e-69 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 227 / 4e-68 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 225 / 2e-67 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 224 / 6e-67 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 217 / 9e-66 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65510 193 / 5e-56 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005253 [exp] 525 / 0 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 318 / 1e-104 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 313 / 1e-104 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 313 / 2e-102 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030792 [exp] 308 / 2e-100 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10024101 [exp] 266 / 4e-85 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 260 / 5e-83 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10001553 [exp] 258 / 6e-82 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10008939 [exp] 247 / 2e-76 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078600 [exp] 336 / 2e-112 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 313 / 5e-103 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.018G102200 [exp] 265 / 6e-85 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.003G185300 [exp] 259 / 4e-83 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 258 / 2e-82 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.010G247200 [exp] 243 / 1e-75 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 238 / 2e-74 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.001G018400 [exp] 232 / 2e-70 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 231 / 1e-69 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 230 / 1e-69 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10030671 pacid=23155173 polypeptide=Lus10030671 locus=Lus10030671.g ID=Lus10030671.BGIv1.0 annot-version=v1.0 ATGGAAATGATGAATGTGAAGAACGAGGAGATCGTATCCGGAAGCCGACGGGGCCGAGGAGACGGCGGGAAGAAAGGAGGGGGCGACGCGGGAGGGGGGC GGGCGACGCGCGAGAGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACAAATAGCGATAGGGGAATTAATAAAAAAAAGAA TTCCAGGACGGAGGGGGCGGCGGCCGGAAGTAGTACGGCCGTTAAGAGGAGCTCACGGTTTCGCGGAGTGAGCAGACATAGATGGACGGGGCGTTACGAA GCGCATTTGTGGGACAAACTGTCGTGGAATGTCACCCAGAAGAAGAAAGGGAAACAGGTTTATCTTGGGGCTTACGACGACGAAGAGGCGGCGGCGAGAG CGTATGATTTGGCAGCGCTCAAGTACTGGGGGACTTCTACTTTTACCAACTTCCAGATATCGGATTATGAGAAGGAGGTTGAGATCATGAAGAATGTAAC TAGAGAGGAGTACTTGGCCTCCCTAAGAAGGAAGAGCAGTGGATTCTCTCGAGGAGTATCGAAATACCGGGGAGTTGCGAGGCACCATCACAATGGAAGA TGGGAAGCTCGAATCGGCAGAGTTTTCGGCAACAAGTATCTCTACCTTGGCACTTACGGGACGCAGGAAGAGGCGGCGAGGGCATACGACATAGCGGCAA TCGAGTACCGAGGGATCAACGCCGTCACGAACTTCGACCTCAGCACTTACATCAGGTGGCTTAAGCCTGATCATCAAGGGAATCCCACTTCTATCCCTCC GGCCAACCACCAACACCACCATCAAACGATAATATCAGAAACCAACATCATTAACGACGGTACTAATAACACAACTCCAACCACCGACTATTTCGTCACT AATAACAACAACAACCACAACCAACAGCCAGAAGAAGAACTACTCTTCCAGGACTACCTCAGCTCGCCACCTAAGCAACACGCTTTCCAAGAACCCACTT CCGCCGCCGCCGTTATTACCAACAACAAGACTACAACTACTAGTTCTTCTTCGTCTTCCACGTCGACGGCGGCAGGGGCGGGGGCGCCGTCAGCGCTGGG GCTTCTGCTGCGGTCGACCATGTTCAGGGAGCTGGTGGAGAAGAACGTGTATGACGTCATCCAGGTGGGGAATCATCATCATGAAGTAGAGGATGATTAT GGAGGGATGTTTAATTACGACGACGGGATTATCGGTGGTGGTGATGGTGGAGACGGTTTCGCGCCGTTTGGTTATCCTTCTTCCTCCAACGGCACTACTA AAGTTGTGGACGACGGGATCGAGCTTCACGAAAGGGAGCTACAGTTCCTTTTCTGA
AA sequence Show only first row Show all	>Lus10030671 pacid=23155173 polypeptide=Lus10030671 locus=Lus10030671.g ID=Lus10030671.BGIv1.0 annot-version=v1.0 MEMMNVKNEEIVSGSRRGRGDGGKKGGGDAGGGRATRERDXXXXXXXXXXXXXXITNSDRGINKKKNSRTEGAAAGSSTAVKRSSRFRGVSRHRWTGRYE AHLWDKLSWNVTQKKKGKQVYLGAYDDEEAAARAYDLAALKYWGTSTFTNFQISDYEKEVEIMKNVTREEYLASLRRKSSGFSRGVSKYRGVARHHHNGR WEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPDHQGNPTSIPPANHQHHHQTIISETNIINDGTNNTTPTTDYFVT NNNNNHNQQPEEELLFQDYLSSPPKQHAFQEPTSAAAVITNNKTTTTSSSSSSTSTAAGAGAPSALGLLLRSTMFRELVEKNVYDVIQVGNHHHEVEDDY GGMFNYDDGIIGGGDGGDGFAPFGYPSSSNGTTKVVDDGIELHERELQFLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10030671 [exp]	0	1

Compare expression of checked genes

Lus10030671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.