Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28910 275 / 1e-91 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT3G47600 267 / 2e-88 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT5G62470 258 / 1e-84 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G74650 257 / 2e-84 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT1G08810 227 / 2e-73 MYB ATMYB60 myb domain protein 60 (.1.2) AT2G31180 189 / 6e-59 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G15310 190 / 1e-58 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 188 / 6e-57 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G02940 184 / 4e-56 MYB ATMYB107 myb domain protein 107 (.1) AT3G23250 183 / 4e-56 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005245 [exp] 415 / 7e-147 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10015369 [exp] 289 / 4e-97 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10002056 [exp] 264 / 3e-87 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10024218 [exp] 244 / 1e-79 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10042200 [exp] 241 / 2e-77 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10008616 [exp] 240 / 8e-77 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10009522 [exp] 233 / 2e-75 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 233 / 3e-75 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10033003 [exp] 187 / 1e-56 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126700 [exp] 272 / 8e-90 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.017G082500 [exp] 270 / 1e-89 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.013G067500 [exp] 232 / 8e-75 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 231 / 2e-74 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.019G118200 [exp] 192 / 2e-58 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.017G086300 [exp] 191 / 5e-58 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.013G148600 [exp] 190 / 5e-58 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.012G140700 [exp] 187 / 1e-57 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 187 / 7e-57 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.015G143500 [exp] 184 / 2e-56 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030677 pacid=23155327 polypeptide=Lus10030677 locus=Lus10030677.g ID=Lus10030677.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCACCGTGCTGTGATGCAGGAGGAGTTAAGAAAGGGCCATGGACTCCTGAAGAAGACATCCTCCTCGTCTCCTACATTCACCACCACGGCC CTTCTAACTGGAGATCCATCCCCACCAACACTGGGCTGCGTAGATGCAGCAAAAGCTGCCGGCTGAGATGGACTAATTACCTTCGTCCTGGGATCAAACG TGGTAATTTCACTCCTCAGGAAGACCAAATGATCATCCATCTCCAAGCCCTTCTTGGCAACAGATGGGCAGCCATAGCATCGTATCTCCCAGAGAGGACA GATAACGACATTAAGAACTACTGGAACACTCATCTGAAGAAGAAGCTGCTCAACAATTCACCTCACAGGGTTAATAATGGCGTATCTGATCATCATCAGC GCAATTCTTCTCCAGCTTCACGAACAGCATCTCCTTCATCATCTGCATCGTCATCATCGGGTTCACCCTCCAGAGGCCAATGGGAAAGACGGCTCCAGAC CGACATCCACACAGCTCGCCAAGCTCTTTCCGAAGCGATTTCCCCATCTCTATCCTCCGCCCCGGATCTCAACTCTTCCCACGCGCCGCCGACGGCGGCT GCGGCGTACGCGTCCAGCGCCGAGAATATCGCCAAGTTGCTTAAAGGCTGGATGAAGAAATCGAAAACCGACGACTCGGCGGCTGGTGGTGAATCTTCGC AGGTAAGCGGGTATTCGACGGTCGGGTTAGCGGGTCAATCGATGGATCTCGGGTCCGGGGAGATGAATTCGGATTCCCGTCATACGTCGCCGTATGGGGG ATATAGCAGGAAGGCGGAAGAGGCGCGTTTGTCGTTGCTTGAGAAATGGCTACTGGATGAAGGAACGGCGTCCACCGCAGGGAAATACGAGTTTCTGTCG ACGTTAATGGATGGAGATAACTTCATGTAG
AA sequence Show only first row Show all	>Lus10030677 pacid=23155327 polypeptide=Lus10030677 locus=Lus10030677.g ID=Lus10030677.BGIv1.0 annot-version=v1.0 MGRAPCCDAGGVKKGPWTPEEDILLVSYIHHHGPSNWRSIPTNTGLRRCSKSCRLRWTNYLRPGIKRGNFTPQEDQMIIHLQALLGNRWAAIASYLPERT DNDIKNYWNTHLKKKLLNNSPHRVNNGVSDHHQRNSSPASRTASPSSSASSSSGSPSRGQWERRLQTDIHTARQALSEAISPSLSSAPDLNSSHAPPTAA AAYASSAENIAKLLKGWMKKSKTDDSAAGGESSQVSGYSTVGLAGQSMDLGSGEMNSDSRHTSPYGGYSRKAEEARLSLLEKWLLDEGTASTAGKYEFLS TLMDGDNFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10030677 [exp]	0	1
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	9.2	0.6749
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	12.0	0.6875
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	15.8	0.7011
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	23.9	0.6986
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	26.7	0.6892
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10003713 [exp]	26.8	0.6965
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	29.0	0.6804
AT3G55390			Uncharacterised protein family...		Lus10001709 [exp]	35.2	0.6900
					Lus10020900 [exp]	37.1	0.6847
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	41.4	0.6773

Compare expression of checked genes

Lus10030677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.