Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15240 481 / 4e-169 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 443 / 1e-154 Transmembrane amino acid transporter family protein (.1) AT2G41190 307 / 1e-99 Transmembrane amino acid transporter family protein (.1) AT2G39130 307 / 3e-99 Transmembrane amino acid transporter family protein (.1) AT5G02180 279 / 2e-88 Transmembrane amino acid transporter family protein (.1) AT3G54830 279 / 2e-88 Transmembrane amino acid transporter family protein (.1) AT5G02170 276 / 1e-87 Transmembrane amino acid transporter family protein (.1.2) AT3G09330 268 / 2e-84 Transmembrane amino acid transporter family protein (.1) AT3G09340 267 / 3e-84 Transmembrane amino acid transporter family protein (.1) AT5G16740 185 / 8e-54 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005239 [exp] 784 / 0 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10012824 [exp] 400 / 3e-137 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 379 / 7e-129 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 280 / 8e-89 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 270 / 2e-84 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 263 / 5e-81 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10023029 [exp] 253 / 6e-81 AT3G28960 280 / 6e-92 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 269 / 1e-79 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10024374 [exp] 213 / 4e-63 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083500 [exp] 557 / 0 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.017G083700 [exp] 550 / 0 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 397 / 3e-136 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 392 / 3e-134 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 337 / 7e-113 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 303 / 8e-98 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 296 / 5e-95 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 276 / 2e-87 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 250 / 1e-78 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 208 / 4e-62 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10030683 pacid=23155301 polypeptide=Lus10030683 locus=Lus10030683.g ID=Lus10030683.BGIv1.0 annot-version=v1.0 ATGGAAGTATCTCCTCATACCGACTCTTCACTGGATGTTCCATTAATCATTGATCAAGAGCAGCACAAGCTTGCATCCAAGCTTGATGCTGATCTAGAAT CCAGTTTCGATTCTCGATATGAAGGAAATACTTCTTCCTTCAAAACCATGTTCCATGGACTAAATTCATTATCAGGTGTTGGGATTCTTTCAACTCCATA CGCCGTTGCATCCGGAGGATGGCTGAGCTTGATCTTATTAATGGTAATAGCCGCTGCAGCATACTACGCAGGTCTACTGATTAAAAGGTGTATGGAAGAA GATTCAACGATCCGAACATATCCCGACATAGGCGACAGAGCGTTCGGCAAGAAAGGGAAAATTCTGGTATCTGTTTTCATGAACGTGGAGCTTTATTTGG TGGCGACTGGATTCCTAATTCTGGAAGGTGATAACTTGGTGAATTTGTTCCCCGACATGGCAATTAAAATAGCGGGGCTACAAATAGGCGGAAGGCAAAG CTTTGTGATACTGGTTGCTCTCATAATCTTGCCTTCTGTTTGTTTGGACAACATGAACATACTCTCCTACGTCTCTGCTAGTGGAGTTTTGGCTTCTGTC ATTATCTTAGTTTCGATCTTCTGCACTGGTGCGTTTGAAGGAGTTGGATTTCATCACAAAGGAACTCTGTTGAATTGGGCTGGAATTCCGACTGCGGTTA GCTTGTATGCCTTCTGTTACTGTGCTCATCCTGTCTTCCCAACTCTCTACACTTCTATGAAAAACAAACAGCAATTCTCCAATGTCTTGCTAGTGTGCTT CATTCTCTGCACACTATGCTACGCATTAATGGCCATCTTCGGCTACATGATGTTTGGTTCGACAGTCCAGTCCCAGATAACACTAAACTTACCGACGAAC AAGTTCACTGCGAAGCTGGGCATATACACCACGTTAGTCAACCCCATTGCGAAATACGCACTCATGGTCACCCCTATAGTGAACGTAGTGAAGAAGAGGT TCCGATGCTACTGCAACAAGAAGCCCTTCAGCTTCTTCATCAGTGCAGCTTTTGTTATCAGTACGGTCATCGTGGCTCTGGCATTGCCTTTCTTCGGAGA CCTGATGTCGCTGGTGGGAGCATTCCTGAGCGTGACGGCTTCCATCATAATTCCATGCGCCTGCTACCTGAAGATTTCCGGGAGCTATAACAAGTTTGAG TTGGAGACGGTGTTGCTTTGGGGTATAGTAGCGTTGGGTGTTGTCATTGTCGTCTTTGGGACCTATACAGCTGTGCTGCAGATATTCCATCAGCTGCTGT AA
AA sequence Show only first row Show all	>Lus10030683 pacid=23155301 polypeptide=Lus10030683 locus=Lus10030683.g ID=Lus10030683.BGIv1.0 annot-version=v1.0 MEVSPHTDSSLDVPLIIDQEQHKLASKLDADLESSFDSRYEGNTSSFKTMFHGLNSLSGVGILSTPYAVASGGWLSLILLMVIAAAAYYAGLLIKRCMEE DSTIRTYPDIGDRAFGKKGKILVSVFMNVELYLVATGFLILEGDNLVNLFPDMAIKIAGLQIGGRQSFVILVALIILPSVCLDNMNILSYVSASGVLASV IILVSIFCTGAFEGVGFHHKGTLLNWAGIPTAVSLYAFCYCAHPVFPTLYTSMKNKQQFSNVLLVCFILCTLCYALMAIFGYMMFGSTVQSQITLNLPTN KFTAKLGIYTTLVNPIAKYALMVTPIVNVVKKRFRCYCNKKPFSFFISAAFVISTVIVALALPFFGDLMSLVGAFLSVTASIIIPCACYLKISGSYNKFE LETVLLWGIVALGVVIVVFGTYTAVLQIFHQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	0	1
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	2.6	0.8876
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	5.5	0.8546
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	8.8	0.8245
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	9.5	0.8694
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	10.2	0.7917
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10040121 [exp]	10.7	0.7935
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028501 [exp]	12.0	0.8447
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003265 [exp]	13.0	0.8025
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	13.3	0.8007
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	13.7	0.8145

Compare expression of checked genes

Lus10030683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.