Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15450 1563 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 1243 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 841 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G50920 681 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 681 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 557 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT4G14670 535 / 1e-179 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 172 / 4e-47 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 67 / 4e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 63 / 1e-09 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013191 [exp] 1820 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 1268 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10021159 [exp] 810 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 754 / 0 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10036017 [exp] 652 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 649 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 631 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10013459 [exp] 551 / 1e-178 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10040527 [exp] 459 / 2e-151 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090600 [exp] 1612 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.004G124800 [exp] 1601 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 1249 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.015G057000 [exp] 844 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 843 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.012G105900 [exp] 677 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 674 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.005G197400 [exp] 314 / 1e-96 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G110000 [exp] 321 / 8e-95 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G112000 [exp] 318 / 9e-94 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10030705 pacid=23155296 polypeptide=Lus10030705 locus=Lus10030705.g ID=Lus10030705.BGIv1.0 annot-version=v1.0 ATGTCTGCCACCACCTCCGCCACCGCGGCTTTTTCCGCGGGGGTCAGTTTCCGCAGCCGTCCCAAGACCCCACTCCATCCGAAGCCCAACTCTTTCCGCT TTCCAACTCCCTTGGGAGCTTCATTCACCCCCTTTCGTCTCAACAGGATCGACTACCGTGGTCGCGATAGGATTTCAAATACCGACTCCTTTGTTGTTCG ATGTGATGCTTCCAGCAATGGGAGGATTACTCAGCAGGAGTTCACAGAAATGGCGTGGCAAGGTGTTGTTTCCTCCCCTGATGTTGCCAAGGAGAACAAG CATCAGATTGTGGAGACTGAGCATCTGATGAAATCCTTATTAGAGCAGAAGAATGGCCTTGCTCGTAGGATCTTCTCGAAAGTTGGAGTTGATAATACTC GCCTTCTTGAAGCTACTGATAAGTTCATCCAACGCCAACCCAAGGTCCTAGGTGAGTCGTCTGGTTCGATGTTGGGTCGTGATTTGGAAGGTTTGATTCA GCGGGCGAGGGAGTTCAAGAAAGAGTATGGAGATTCGTACATCTCTGTGGAGCATTTGGTTCTTGGTTTTGCAAATGATCAACGATTTGGACGGCAGTTG TTTAAGGATTTCCAAATCTCTCTTCCGTCTTTGAAATCTGCTGTTGAGTCTATAAGGGGACGCCAGTCAGTCATTGATCAAGATCCTGAAGGTAAATATG AAGCATTGGAGAAATATGGTAAAGACTTGACTGCCATGGCGAAAGCAGGAAAGCTGGATCCTGTCATCGGGCGCGATGATGAGATACGTAGATGCATTCA AATTCTCTCCAGGAGAACCAAGAACAACCCTGTGTTGATTGGTGAACCTGGTGTAGGAAAAACAGCAATTTCTGAAGGGCTTGCCCAAAGGATTGTACAA GGGGATGTACCACAAGCTTTGATGAATCGCAAGCTAATATCCCTTGACATGGGTGCATTGATTGCTGGAGCCAAATACCGTGGTGAATTTGAGGATAGAT TAAAAGCGGTATTGAAGGAAGTCACAGACTCAGATGGTCAGATTATCCTTTTCATTGACGAGATACATACTGTGGTTGGTGCAGGAGCTACAAATGGTGC AATGGATGCGGGTAATCTTTTGAAGCCAATGCTTGGTCGTGGAGAGTTACGTTGTATTGGTGCTACAACTTTGGATGAATATCGTAAGTATATCGAGAAG GATCCAGCTTTGGAACGACGTTTCCAACAAGTCTATGTTGACCAACCATCAGTGGAGAACACAATCTCAATCTTGAGAGGACTGCGCGAACGATATGAAC TGCATCACGGAGTGCGTATCTCTGATGGTGCATTAGTGGAAGCTGCAATTCTTTCTGATCGCTATATTAGTGGAAGGTTTTTACCCGACAAAGCCATCGA TTTGGTAGATGAAGCAGCTGCAAAATTGAAGATGGAAATCACTTCAAAACCCACTGCTCTGGATGAAATCAATCGAACTGTATTGAAAATGGAGATGGAA AGGTTGTCTCTGAAAAATGATACAGATAGAGCTTCTAAAGACAGATTGAGTAGGCTTGAGGCTGAATTGGCAGTGCTGAAGAAGAAACAAGCTGAGCTAA CCGAGCAATGGGAGCATGAGAAATCAGTCATGACTCGTATTCAGTCTATTAAGGAAGAGATCGATAGGGTGAACCTGGAAATTCTCCAAGCTGAACGTGA ATACGACCTTAACCGTGCCGCTGAACTTAAATATGGAAGCTTGAACGCCTTGCAACGCCAACTCGAAGGTGCAGAAAAGGAGCTGAACGAGTACATGAGC TCAGGAAAGTCCATGTTAAGGGAGGAAGTCACAGGAGACGACATTGCAGAAATTGTCAGTAGATGGACCGGCATTCCTGTCTTGAAACTCAAGCAATCCG AGAGAGAGAAGCTACTTCATTTGGAAGAAGAGCTACACAGACGAGTCATTGGTCAGAATCCAGCTGTAACCGCAGTTGCCGAGTCGATCCAACGGTCTCG TGCCGGACTCTCTGATCCCCGACGGCCAATCGCCAGCTTCATGTTCATGGGACCGACCGGTGTCGGGAAAACAGAACTTGCTAAAGCTCTTGCATCATAC CTATTCAACACCGAAGAATCGCTTGTGCGAATTGATATGAGTGAATACATGGAGAAGCACGCAGTTTCGCGACTGATTGGAGCGCCACCTGGCTACGTAG GGTACGAGGAAGGAGGGCAATTGACAGAAATCGTTCGCAGAAGACCTTATGCCGTCATTTTGTTTGACGAGATAGAGAAGGCTCATGCTGACGTGTTCAA TGTCTTCCTCCAAATTTTGGATGACGGGAGGGTAACCGATTCACAAGGTCGTACTGTTAGCTTCACCAACACGGTGATCATCATGACTTCAAATGTCGGC TCGCAGTACATTCTCGACACGGATGATGATCTTTCGAAGGAAGCCACTTACATGACAATCAAGCGGAGGGTTATGGATGCTGCGAGATCGGTGTTTCGTC CCGAGTTCATGAACAGGGTTGATGAGTACATAGTTTTCCAGCCTCTGGATCGTGACCAGATCAACAAGATCGTCAGGTTACAGCTTGCGCGTGTGCAACA GAGAATTGCGGATAGGAAGATGAAACTGCAGGTGACAGATACGGCAGTTGAGTTTCTGGGTAACCTCGGATATGATCCGAGCTATGGTGCTAGGCCGGTG AAGAGAGTGATTCAGCAGAACGTAGAGAACGAGATAGCTAAGGGTATCTTGAGGGGAGAGTTCAAAGATGAGGATACTGTAGTGATTGATACAGAGGTGA CGGTCTCGAACGGTCAACTTCCTCAACAGAAGCTGGCTTTCCAACGACTGGAGAATGGGAAGGATGAATCAACAGCTAAAGACAGAGAGACAGCTTCACG GTTGGGTTGA
AA sequence Show only first row Show all	>Lus10030705 pacid=23155296 polypeptide=Lus10030705 locus=Lus10030705.g ID=Lus10030705.BGIv1.0 annot-version=v1.0 MSATTSATAAFSAGVSFRSRPKTPLHPKPNSFRFPTPLGASFTPFRLNRIDYRGRDRISNTDSFVVRCDASSNGRITQQEFTEMAWQGVVSSPDVAKENK HQIVETEHLMKSLLEQKNGLARRIFSKVGVDNTRLLEATDKFIQRQPKVLGESSGSMLGRDLEGLIQRAREFKKEYGDSYISVEHLVLGFANDQRFGRQL FKDFQISLPSLKSAVESIRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQ GDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTDSDGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK DPALERRFQQVYVDQPSVENTISILRGLRERYELHHGVRISDGALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRTVLKMEME RLSLKNDTDRASKDRLSRLEAELAVLKKKQAELTEQWEHEKSVMTRIQSIKEEIDRVNLEILQAEREYDLNRAAELKYGSLNALQRQLEGAEKELNEYMS SGKSMLREEVTGDDIAEIVSRWTGIPVLKLKQSEREKLLHLEEELHRRVIGQNPAVTAVAESIQRSRAGLSDPRRPIASFMFMGPTGVGKTELAKALASY LFNTEESLVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG SQYILDTDDDLSKEATYMTIKRRVMDAARSVFRPEFMNRVDEYIVFQPLDRDQINKIVRLQLARVQQRIADRKMKLQVTDTAVEFLGNLGYDPSYGARPV KRVIQQNVENEIAKGILRGEFKDEDTVVIDTEVTVSNGQLPQQKLAFQRLENGKDESTAKDRETASRLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	0	1
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	1.0	0.9241
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	2.0	0.8864
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	4.2	0.8808
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	4.7	0.8299
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	6.3	0.8385
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10036288 [exp]	7.1	0.8631
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	7.7	0.8690
AT3G25580			Thioredoxin superfamily protei...		Lus10013889 [exp]	9.2	0.8502
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	11.6	0.8328
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10016738 [exp]	13.7	0.7897

Compare expression of checked genes

Lus10030705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.