Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70000 209 / 9e-67 MYB myb-like transcription factor family protein (.1.2) AT5G47390 162 / 3e-47 MYB myb-like transcription factor family protein (.1) AT3G16350 149 / 2e-42 MYB Homeodomain-like superfamily protein (.1) AT5G61620 139 / 7e-39 MYB myb-like transcription factor family protein (.1) AT1G74840 125 / 1e-34 MYB Homeodomain-like superfamily protein (.1.2) AT1G19000 126 / 2e-34 MYB Homeodomain-like superfamily protein (.1.2) AT5G56840 119 / 3e-32 MYB myb-like transcription factor family protein (.1) AT2G38090 113 / 2e-29 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT1G49010 112 / 6e-29 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 110 / 2e-28 MYB Homeodomain-like transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013289 [exp] 414 / 3e-147 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 213 / 4e-68 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 204 / 4e-65 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10040181 [exp] 160 / 9e-47 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 160 / 1e-46 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10037560 [exp] 155 / 1e-44 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 147 / 3e-41 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10036652 [exp] 141 / 4e-40 AT1G74840 176 / 4e-54 Homeodomain-like superfamily protein (.1.2) Lus10025822 [exp] 134 / 2e-36 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191800 [exp] 216 / 1e-68 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 212 / 3e-67 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.003G079500 [exp] 164 / 1e-48 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 161 / 3e-47 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 149 / 2e-42 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 148 / 5e-42 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.015G069000 [exp] 142 / 5e-40 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.001G080300 [exp] 134 / 6e-37 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.006G230500 [exp] 129 / 4e-36 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.012G073900 [exp] 129 / 2e-35 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030813 pacid=23155376 polypeptide=Lus10030813 locus=Lus10030813.g ID=Lus10030813.BGIv1.0 annot-version=v1.0 ATGTCTCGAATCTGTTCTCAGTGCGGAATCAACGGCCATAACTCCAGGACATGCGGCGGGGAGCTGAGCTGTATTACTTCCGGCGACGCTACGGGGGCGG CGGAGAACGGGATTATGCTGTTTGGGGTGAGACTCACTGCTGGGATGAACAATACTTTCCGGAAGAGCGCGAGTATGAACAACTTGTCCATGTACGCCGA CCATCGGAACCATAGCTCCGTCTCCGACGGCGTCGTCGTGGTGGCATCTGGGTATGAGTCCGACGACGTCATCCACGCCTCCGGCAGAGGCCGCGAGCGG AAACGAGGGGTGCCGTGGACGGAGGAGGAGCACAGGATGTTTCTGGTAGGGCTGGAGAAAGTGGGGAAAGGGGATTGGAGGGGGATATCGAGGAACTTTG TGAAGACGAGGACTCCAACGCAAGTGGCGAGTCATGCTCAGAAGTACTTTCTCCGGCGGAATAATCAGAATCGGCGGCGGCGGAGGTCTAGTCTCTTTGA CATCACCACGGATAATACACCGTCACCAAACCAAGAAGCCGCCGCTGCAGCGCTGTTTAAGGCCAACAGCGTCCATTTATCCAAGTTCCCTGTCCCAACT TTTCCTTCGGCAACAATCACCGGCGAAAGGCTGATGCTTGGTTCGCCGACGGCAAGGCCGAACGTCGGCCGTCCGATCCCAATCCCGCCGTCTTCGAAAA TGGCGAGTCTGAATCTGAACCAGAAACAGGAACCCTTTCTACCTCTGTCACTCAGGCTATCATCCACTCCTTCACCCGGGGAGCAGTCTTCGTCATCGTC GGCGGGGACAAGGTCGTCGTCCTCTGCTTTTCAGGGCATGTCTAGTGGCGACAGCATCATAAGCGTTGCGTGA
AA sequence Show only first row Show all	>Lus10030813 pacid=23155376 polypeptide=Lus10030813 locus=Lus10030813.g ID=Lus10030813.BGIv1.0 annot-version=v1.0 MSRICSQCGINGHNSRTCGGELSCITSGDATGAAENGIMLFGVRLTAGMNNTFRKSASMNNLSMYADHRNHSSVSDGVVVVASGYESDDVIHASGRGRER KRGVPWTEEEHRMFLVGLEKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNQNRRRRRSSLFDITTDNTPSPNQEAAAAALFKANSVHLSKFPVPT FPSATITGERLMLGSPTARPNVGRPIPIPPSSKMASLNLNQKQEPFLPLSLRLSSTPSPGEQSSSSSAGTRSSSSAFQGMSSGDSIISVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70000	MYB		myb-like transcription factor ...		Lus10030813 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Lus10013289 [exp]	2.0	0.8148
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10008594 [exp]	10.9	0.8188
AT3G20680			Domain of unknown function (DU...		Lus10006344 [exp]	25.5	0.7824
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	27.6	0.8124
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	28.9	0.8092
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	31.6	0.7934
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10010200 [exp]	45.3	0.7741
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	49.5	0.7676
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10011778 [exp]	53.7	0.6580
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10036288 [exp]	55.0	0.7489

Compare expression of checked genes

Lus10030813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.