Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 525 / 6e-165 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 504 / 9e-158 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 473 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 430 / 2e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 431 / 3e-132 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G46270 417 / 3e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G22690 414 / 3e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 414 / 2e-124 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 407 / 3e-122 TAO1 target of AVRB operation1 (.1) AT1G27170 410 / 7e-122 transmembrane receptors;ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019708 [exp] 1068 / 0 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 564 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 560 / 1e-178 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 492 / 5e-153 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 486 / 6e-150 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 472 / 8e-146 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 447 / 4e-137 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10026201 [exp] 436 / 1e-132 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 427 / 2e-129 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G097300 [exp] 606 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 590 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G104301 [exp] 579 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 573 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 573 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 544 / 6e-177 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 553 / 6e-174 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 538 / 1e-171 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 541 / 2e-170 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.008G220200 [exp] 534 / 3e-170 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10030839 pacid=23155332 polypeptide=Lus10030839 locus=Lus10030839.g ID=Lus10030839.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCTTCCTCGTCGGCTTCTACATCTTCCTCACCAACCTACGACGTCTTCCTGAGCTTCAGAGGATTGGACACTCGTCACGGCTTCATCAGCC ACCTCTACAACGCGCTCCAGCTGAAAGGTATCAGCACTTTCAAAGACGATCTGAAGCTGGAACGCGGCAAGTCAATCTCCCCGGAGATTCTCCGCGCAAT CCAGCGGTCTAGGTTTTCGATCGTCGTTTTCTCGAGAGACTACGCTTCTTCCCCTTGGTGCTTGGAGGAACTCGAGACGATCATCCAATGTATGGAGGAG AAGAAAGTCGAGGCCGTTCTACCGATCTTCTACGGCGTAGATCCGTCGGACGTGAGCGAGGTCAAGAACAGTTATGCGGAGTCCTTCGCCAAACACGAGA AGGATTTGGACTTAGATGCTGGGATGTTGCGGAGTTGGAAGTCTGCTCTGAACAAGGCTACTGAGTTGAGCGGCTGGGATTCGCGTAATAGGGATGAACC AACTCTTATCAATGAGATTGTGGCAGATGTGTTGAGTAAGCTAGGCCGTGAATACTCTAACAAGCCTTTAGGTCTTGTTGGAATGGAGCCTCGGATAAAG GAAGTTGAGTTGTTACTGCGAACCGGATTGGTTGATGTGCGGATGGTAGGAATATGGGGCATGGCAGGCATTGGTAAAACAACTACTGCTGAGGCAGTTT ATCACAGTATTTCTCACAAGTTTGATGCTTGTTGCTTCCTTAAGAACATTAGAGAGGCCGCAGAGAGTCATGGGCTGGATCATCTACGAAACAAGCTTCT TTCTCAATTAATTGTGGAAGATGGTGTAAGGATTTTGGACCAGCAGTTAGATGTGCTCATGAAGGGCAGGCTTCGTAGCAAATGTGTCCTTTTTGTTCTC GATGATGTTTCTGATGTAGATCAGTTAACGAGCTTAGCAGGTGATCGTGAGTGGTTTGGATCTGGTAGTAGAATCATCATCACAACTACGAATAAGCATA TACTGGAGCTTCATCAAGTAGATGCAGTTTACGAGGTCAAGCCTTTAACTCATGTTGAATCTCTTCAGCTATTTCGCCAAAATGCTTTTAAGAAAACCTC CTCCACACAGGAACTTGTGGCTTTGTCAGATCGTGTTGTCAATTACGCAAAAGGGCTCCCCCTGGCTCTTAAAGTTCTGGGATCCTCCTTATACAACATG AACAGATGTGAATGGGAAAGCAGGCTGAACACACTTGAAGAGATACCCCCAGGGAATATAGTGAAGATGCTTAGACTGAGCTTTGATGTGCTTGAAGATT ATGAGAAGAGCATATTTCTGGATATTGCTTGTTTCTTCAATGGGGAGGAGAAAGAATATGTCATGAGTATTCTAGAAAGAGCTGGGTTTTCTCCAGCTTA CGGTTTAAAAGTCCTCCTCAATAGATCTCTCATAAGCATTCAAGATGACCGAGTCTGGATGCATAATTTGTTACAGCAAATGGGATGGGAAATTGTCCGG CAAGAGTCCGTGAAAGATGCAGGCAAACGTAGCAGGTTGTGGAATAATCAAGATATCTGCAATGTGTTGGCTAAGAAAGCGGGGACAAAAGATGTTGAAG GTGTTGTCCTTGACATTTCTAAAGTAGATCATGTTTCTTTAGCTCTTGAAGCTTTCTGCGGGATGAGTACACTCCGATTCCTCAAAATCTGCTACATTCA CCAGTCTGGAAGTTCTGAATACTTACTCGGGAAAGAAGCATCATGCCCAGATGTCGATAACTCCGGAGAAAATGAGAGCTTGCATGAAGGATCCAGGCTG CATCTCCGGCAAAAATTGAGAACTCTTTCAAATGAGTTGAAGGGTATTCACCGACATGGATACCCATTTAATATCCGGAAAAGACTGTATGGCTCACCCG AAAGCTCTAAGCTGCAATTTTCTGGAAAGCTGACAACTCTTTCAAATGAATTAAGGATTCTTCATTGGCATGAATATCCGTTGGACTCCTTACCTGCAGA TTTTTATCCACGGAACCTGGTTGAACTTAACCTGTCGTATAGTCGCATACATAATTTCTGGACTAGGAAGAAGGTTTTTGACAAGTTGAAGTTCATGAAA CTCAGCAACTCGCAAGAACTCATTGAAACACCAGATTACTCTGGGATGCCCAATCTTGAGATACTAATCCTGGAAGGGTGTGTGAAGTTAACAGAAGTTC ATCCTTCGGTTGGATCTCTGCAGAAACTCATTTGTCTAAATCTCAAAGGCTGCAAAAGTCTCTGCCGTCTGCCAAAGAGTATAGCCATGAAATCCCTACA AGTTCTCACACTGTCAGGATGTTCAAAGCTAAAGAAGTTGCCAGAGTTTGAGCAAAACATGGTGAGCTTGTCCCAGCTTCTCCTCGACGGCACAGACATT CCACAACTACCTAATTCAATCCAAAACCTCACCAGCCTTCTTGTGTTGAGCGTCACAAACTGTAAACGCCTAGAGTTTCTCACCGAAGCCGTTGGTTGTT GTCGGTCCTTGAAAATCCTTGGTCTTACTGGATGTTCGAATCTTCGACTACTGAATTTTGAGTTAGACATGCTGGAAAACTTGGAGGAGATTCATGCAGA AGGAACCCGTCTCGGATTAAGGTATCTGATGGTGGACAGGGAACTGAAGAAGCTGAAAGTATTGTCATTTAGTGGTTCCAGCAGGTCGCCATTTTCCTTG AGAGATTTTTTCCGGGACTATTTGTCTGAAACTGAAACTGGCGAACGGCACCATTTGATTAGGATGTTTTGGTACGGTAGAGATCACTGCAATTTGAGTG ATGCGTCTTGTTCCTTGACAAGTTTGGATCTCAGTAACTGCAACTTGGAAGACCTCCATTATGGTATTAGAGATATCGACAGTCTGAGAAATCTGGATCT AAGCGGGAATCCGATCACCTTCCTTGGCAGCATTCCGAGGAATTTGCAAGTTCTTCGTTTGGCGAATTGCAAGAAGCTCTCGTCTCTTCCTGGTTTGCCG TCTTCAATGTATTGTTTGGACGCGCCACATTGCTCGTTATTGAGTTCCATTGAACCGCCGGGAGGCCTGGAATCGGGAAGAATGCGTGGTTTTAACTTCA TGAACTGCTTCCAGCTCGGAAGTGTTGCAGTGGAGCTCATGAAAATCCACGTGGAAAAGACTCCTCCGCACTCGGTAGCCGAGATGTCAATCATCATTCC AGCTACCGGCATGCCAGCAGAGTGGCTTCAACATCAAATGGACTCCAACAAAGCATCCTTGAACCTGCCGTCAGATTGGTTCGACAACACTCTTAAAGGC TTGGCACTGTGGACAGTATTCAAAGTCGGGAACTCGAGGTGTCGTGCTGAACTCAGTCTGGACTTCGAATTGAAGTGCAACGGTCAGAACGTGATATCCG AGGTCGGATTCGGGTTGAACACTGGCACAATTGTGAACTCGGACCACCTCTGGCTGCGCTATATCCCGGTGTTCATGTTCAAGACCATAAGATCAAGGGA ATCCTCGAGTTGCATTGAGGTTGCGTTTGTGAGTAATAGCCCCGAATTGGTGGTGACGAGCTGTGGGATGTATCCTGTCTGCCGAGATAAACACGGTCAG TGGATAAGTGCATCTTCAACTGTAAACTCTGGCCCTTCTAAACGGAATTGA
AA sequence Show only first row Show all	>Lus10030839 pacid=23155332 polypeptide=Lus10030839 locus=Lus10030839.g ID=Lus10030839.BGIv1.0 annot-version=v1.0 MASSSSSASTSSSPTYDVFLSFRGLDTRHGFISHLYNALQLKGISTFKDDLKLERGKSISPEILRAIQRSRFSIVVFSRDYASSPWCLEELETIIQCMEE KKVEAVLPIFYGVDPSDVSEVKNSYAESFAKHEKDLDLDAGMLRSWKSALNKATELSGWDSRNRDEPTLINEIVADVLSKLGREYSNKPLGLVGMEPRIK EVELLLRTGLVDVRMVGIWGMAGIGKTTTAEAVYHSISHKFDACCFLKNIREAAESHGLDHLRNKLLSQLIVEDGVRILDQQLDVLMKGRLRSKCVLFVL DDVSDVDQLTSLAGDREWFGSGSRIIITTTNKHILELHQVDAVYEVKPLTHVESLQLFRQNAFKKTSSTQELVALSDRVVNYAKGLPLALKVLGSSLYNM NRCEWESRLNTLEEIPPGNIVKMLRLSFDVLEDYEKSIFLDIACFFNGEEKEYVMSILERAGFSPAYGLKVLLNRSLISIQDDRVWMHNLLQQMGWEIVR QESVKDAGKRSRLWNNQDICNVLAKKAGTKDVEGVVLDISKVDHVSLALEAFCGMSTLRFLKICYIHQSGSSEYLLGKEASCPDVDNSGENESLHEGSRL HLRQKLRTLSNELKGIHRHGYPFNIRKRLYGSPESSKLQFSGKLTTLSNELRILHWHEYPLDSLPADFYPRNLVELNLSYSRIHNFWTRKKVFDKLKFMK LSNSQELIETPDYSGMPNLEILILEGCVKLTEVHPSVGSLQKLICLNLKGCKSLCRLPKSIAMKSLQVLTLSGCSKLKKLPEFEQNMVSLSQLLLDGTDI PQLPNSIQNLTSLLVLSVTNCKRLEFLTEAVGCCRSLKILGLTGCSNLRLLNFELDMLENLEEIHAEGTRLGLRYLMVDRELKKLKVLSFSGSSRSPFSL RDFFRDYLSETETGERHHLIRMFWYGRDHCNLSDASCSLTSLDLSNCNLEDLHYGIRDIDSLRNLDLSGNPITFLGSIPRNLQVLRLANCKKLSSLPGLP SSMYCLDAPHCSLLSSIEPPGGLESGRMRGFNFMNCFQLGSVAVELMKIHVEKTPPHSVAEMSIIIPATGMPAEWLQHQMDSNKASLNLPSDWFDNTLKG LALWTVFKVGNSRCRAELSLDFELKCNGQNVISEVGFGLNTGTIVNSDHLWLRYIPVFMFKTIRSRESSSCIEVAFVSNSPELVVTSCGMYPVCRDKHGQ WISASSTVNSGPSKRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10030839 [exp]	0	1
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	3.2	0.8760
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	9.9	0.8692
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	13.5	0.8590
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	15.6	0.8582
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	19.0	0.8466
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	21.1	0.8428
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	22.6	0.8165
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	23.9	0.8102
					Lus10001309 [exp]	24.1	0.8215
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	29.0	0.8117

Compare expression of checked genes

Lus10030839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.