Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70300 1189 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 1140 / 0 Potassium transporter family protein (.1) AT2G40540 991 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 772 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT4G23640 741 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT2G30070 741 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G60160 659 / 0 Potassium transporter family protein (.1) AT1G31120 649 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 647 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT4G19960 624 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030632 [exp] 1499 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 1266 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 1035 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10030539 [exp] 958 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 944 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10018324 [exp] 659 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 642 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10038361 [exp] 615 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 613 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094300 [exp] 1268 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 1256 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 995 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 966 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.014G144900 [exp] 859 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 844 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 799 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 767 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.015G034200 [exp] 739 / 0 AT2G40540 741 / 0.0 potassium transporter 2 (.1.2) Potri.005G095900 [exp] 738 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10030857 pacid=23155381 polypeptide=Lus10030857 locus=Lus10030857.g ID=Lus10030857.BGIv1.0 annot-version=v1.0 ATGGATCTAGAGACTGGAGCTCGTCACAATCAGCTCAAGAAAGAGTCATGGAGGACGGTACTGACACTAGCGTACCAGAGCCTGGGAGTGGTCTACGGAG ATTTAAGCATTTCTCCACTCTACGTCTACAAGAGTACTTTCGCAGAGGACATTACGCATTCGGAGACCAACGAAGAGATCTTTGGGGTTCTTTCCTTTGT TTTCTGGACGTTAACCCTAGTCCCTCTCTTGAAATACGTGTTCATAGTTCTTAGAGCTGACGATAATGGAGAAGGAGGGACTTTTGCTCTCTACTCGCTC CTGTGTCGGCACGCCCGAGTCAACTCACTCCCCAATCGCCAGGTGGCGGACGAGGAGCTATCCGAGTACAAGAAGGATTACCCGGCGGGGGAATATTCGT CGTCGTCAGGGTTGAAGTCTACGCTCGAGAAGTATAAAGTTCTGCAGAGGATCTTGCTGGTTTTGGCGTTGATTGGTACCTGTATGGTGATTGGTGATGG TGTCCTCACCCCTGCCCTTTCTGTTTTTTCTGCTGTTTCTGGAGTTGAGCTTTCAATGTCCAAGGAGCATCACAAATATGTTGAACTCCCAGCTACATGC ATCATACTGGTAGCCTTGTTTGCCCTGCAACATTACGGGACCCACCGGGTCGGATTCTTGTTCGCTCCGGTGGTTCTGATATGGCTACTGTGCATTAGTT CGATTGGGCTGTACAATATTGTGTACTGGAATCCCCATGTCTACAAAGCTCTGTCACCTTACTACATGTACAAGTTTCTCAAGAAAACTCAGAAGGGTGG TTGGATGTCGTTAGGAGGGATTCTGTTGTGCATAACAGGCTCAGAAGCCATGTTTGCTGATCTTGGTCACTTTTCACAATTGTCTATCAAGATTGCATTC ACCTCTTTGGTTTATCCATCGTTGATCCTTGCGTACATGGGGCAGGCTGCCTATCTATCGAAGCACCATGTTATTGAGAGTGATTACCAAATTGGTTTCT ATGTTTCTGTACCTGATAAGCTACGGTGGCCAGTTCTCGTCATAGCTGTACTCGCTGCTGTAGTAGGAAGCCAAGCAATCATTACCGGAACATTCTCAAT CATCAAGCAGTGTTCGTCGCTCGGTTGCTTCCCTAGAGTCAAAATAGTCCATACATCGGCGAAAGTCCACGGTCAGATCTACATCCCGGAGATCAATTGG ACACTGATGCTGCTGTGTTTGGCCGTCACGATTGGTTTCAGGGATACAAAACGCTTGGGAAATGCTTCAGGTTTGGCAGTTATAACAGTTATGCTGGTGA CAACCTGCCTGATGTCTTTAGTTATTGTCTTGTGCTGGAACAAGAGCGTGTTCCTTGCACTAGCTTTCGTGCTCTTCTTTGGTACGATCGAATCTCTCTA CTTCTCGGCATCACTCATCAAGTTCTTGCAAGGAGCGTGGGTCCCCACCGTGCTGGCACTCATATTCCTCATCGTGATGTGTACCTGGCACTACGGCTCG CTGAAGAAGTACGAATTCGATGTCCAGAACAAGGTCTCAATCAATTGGCTGCTTAGCTTGGGACCAAGTCTTGGCATTGTACGAGTAAGGGGAATCGGGA TCATACACACTGAGCTCGTGTCAGGAATCCCGGCAATCTTCTCCCATTTCGTCACCAACCTTCCGGCATTCCACCAAGTACTTGTCTTCCTCTGCATAAA ATCAGTCCCGGTCCCTCATGTAAGACCCGAGGAGCGGTTCCTCATCGGTCACATCGGTCCGAGAGAGTACAGGCTTTACCGGTGCATAGTACGTTATGGC TACCATGATGTCCATAAGGACGACACAGAGTTCGAGAAGGATTTAGTGTGCAGCATTGCGGAATTCATCCGCGCTGGGAGCACAGAATGCAACAACGAAG TTACCAAAGAAGAAGACCACAAGATGACTGTGGTGGGGACATGTTCGAGCCACATAGATGGGATACGAATGAGCGACGAGAACGATGAGATCGAGCCAGC CGGGACAACATCATCAAGAGAAATGCAAGAGATAAAGTCGTCTCCTTTACCCGCGTCTATAAGGAAGAGAGTGAGGTTCATCGTCCCGGAGACCCCTAAG ATCGACAAGACAGCGAGGGACGAGTTGCAGGAGCTGATGGAAGCGAGGGAGGCCGGAGTAGCGTACATACTCGGGCACTCGCACGTGAAGGCGAAGAAAG GGTCGAGCATGTTGAAGAAGTTTGTGATAAATTATGGGTATGAGTTCTTGAGGAGGAATAGTAGGGCACCAACTTATGGACTTAGTGTGCCTCATGCATC TACCTTGGAAGTAGGGATGGTGTACAATGTTTAG
AA sequence Show only first row Show all	>Lus10030857 pacid=23155381 polypeptide=Lus10030857 locus=Lus10030857.g ID=Lus10030857.BGIv1.0 annot-version=v1.0 MDLETGARHNQLKKESWRTVLTLAYQSLGVVYGDLSISPLYVYKSTFAEDITHSETNEEIFGVLSFVFWTLTLVPLLKYVFIVLRADDNGEGGTFALYSL LCRHARVNSLPNRQVADEELSEYKKDYPAGEYSSSSGLKSTLEKYKVLQRILLVLALIGTCMVIGDGVLTPALSVFSAVSGVELSMSKEHHKYVELPATC IILVALFALQHYGTHRVGFLFAPVVLIWLLCISSIGLYNIVYWNPHVYKALSPYYMYKFLKKTQKGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAF TSLVYPSLILAYMGQAAYLSKHHVIESDYQIGFYVSVPDKLRWPVLVIAVLAAVVGSQAIITGTFSIIKQCSSLGCFPRVKIVHTSAKVHGQIYIPEINW TLMLLCLAVTIGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWNKSVFLALAFVLFFGTIESLYFSASLIKFLQGAWVPTVLALIFLIVMCTWHYGS LKKYEFDVQNKVSINWLLSLGPSLGIVRVRGIGIIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLIGHIGPREYRLYRCIVRYG YHDVHKDDTEFEKDLVCSIAEFIRAGSTECNNEVTKEEDHKMTVVGTCSSHIDGIRMSDENDEIEPAGTTSSREMQEIKSSPLPASIRKRVRFIVPETPK IDKTARDELQELMEAREAGVAYILGHSHVKAKKGSSMLKKFVINYGYEFLRRNSRAPTYGLSVPHASTLEVGMVYNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	0	1
					Lus10023424 [exp]	2.4	0.8310
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10027299 [exp]	4.9	0.7511
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	7.3	0.7627
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023699 [exp]	9.4	0.7377
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	10.3	0.7714
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10028704 [exp]	11.3	0.7566
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	12.0	0.6948
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10000692 [exp]	16.6	0.7562
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	25.0	0.7119
AT5G06980			unknown protein		Lus10026150 [exp]	30.0	0.6861

Compare expression of checked genes

Lus10030857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.