Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72740 149 / 1e-42 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 124 / 2e-33 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT5G67580 108 / 3e-27 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G49950 101 / 1e-24 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 96 / 1e-22 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G54260 57 / 1e-09 winged-helix DNA-binding transcription factor family protein (.1) AT1G17460 52 / 5e-07 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 48 / 5e-06 MYB TRFL6 TRF-like 6 (.1.2) AT5G58340 47 / 9e-06 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 45 / 6e-05 MYB TRFL5 TRF-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040111 [exp] 421 / 6e-149 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 142 / 2e-40 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10019260 [exp] 99 / 1e-23 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10011546 [exp] 99 / 2e-23 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10012092 [exp] 94 / 3e-22 AT1G49950 182 / 3e-56 telomere repeat binding factor 1 (.1.2.3) Lus10025203 [exp] 94 / 6e-22 AT1G49950 175 / 3e-53 telomere repeat binding factor 1 (.1.2.3) Lus10033775 [exp] 93 / 1e-20 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014653 [exp] 92 / 2e-20 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011947 [exp] 84 / 5e-20 ND 43 / 3e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066300 [exp] 191 / 5e-59 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G147400 [exp] 190 / 1e-58 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.014G004900 [exp] 107 / 5e-27 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 107 / 2e-26 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.001G292700 [exp] 103 / 1e-25 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.009G087000 [exp] 98 / 2e-23 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.013G154500 [exp] 52 / 3e-07 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G170200 [exp] 47 / 2e-05 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 46 / 3e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 45 / 5e-05 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030935 pacid=23166799 polypeptide=Lus10030935 locus=Lus10030935.g ID=Lus10030935.BGIv1.0 annot-version=v1.0 ATGGGGAATCCGAAGCAAAAGTGGACGGCGGAGGAGGAGGAAGCTTTGCGAGCTGGTATTGCCAAACACGGCACCGGAAAGTGGAAGTTAATTCAACAGG ACCCTGAGTTCAACCCTTACCTATCCACTCGCTCCAACATCGATCTCAAGGACAAGTGGCGGAACATTATCGTCACCCCCGGTGAGAAATCGCGGACGCC CAAGACTAAAGTGCCCACCGCTGATGATGTCGTTTCTACTCCACTGCCGATCTCCCAAGTTTTAGATGCTCCTCCTGCCCCTATTGTTGCTGCTCCAGTT CCTGCCCCAGTTCCTACTCCAGCTATTCTTCCTGCTGTAACTACGGATGAAGTTGCCAAAATTGCTCCGGTGGATGTTAAAATTTGTTCCAAGTATGATC CAATGATTTTTGAAGCAATTACGGCCTTGAGTTGCAATGAGACATCGGTTGTGGATATCAATGCAATAATTGGTTTCGTTGAGCGAAGGCATGAGTTGCC ACAAAATGGTAGGAAACAAGTAACTTCAAGGTTGAGGGTTTTGGTAAACAGGGAAAAACTTGAAAAGGTCCAGAATTCCTACAGGTTTAAAGAAAGTACG CCAACTGTTGTTGCAAAAGCACCTTCTCCAAAGAAACAAGTGGAACAAGCTAAAGGGTTGCAAAGGAGTGATTCTGCTACTCCAATTGAAACCCTAGAGG AAGCTGCACGGGCTGCTGCCAGCATAATTGCTGAAGCAGAGACCAAAGCTGTTCGTGCCGCAGAAAAAGTTCACGAATTGGAAATAGCATCGATACTGAG AGAGGAGACGGAGTCAATATTGCTTTTTTCCCAACAGATATACGACAGATGTAAGTCCGAATCCATTTACTCGTTCTATCACACTACCTATTCCAATTTC TGCGTCTTTTGTGTCCGCCCCAAGGTACCGAAATCATGCATTTTTTTATATGTGGCAGGTATGCAAGGAGAGACGATAGTGATTTAG
AA sequence Show only first row Show all	>Lus10030935 pacid=23166799 polypeptide=Lus10030935 locus=Lus10030935.g ID=Lus10030935.BGIv1.0 annot-version=v1.0 MGNPKQKWTAEEEEALRAGIAKHGTGKWKLIQQDPEFNPYLSTRSNIDLKDKWRNIIVTPGEKSRTPKTKVPTADDVVSTPLPISQVLDAPPAPIVAAPV PAPVPTPAILPAVTTDEVAKIAPVDVKICSKYDPMIFEAITALSCNETSVVDINAIIGFVERRHELPQNGRKQVTSRLRVLVNREKLEKVQNSYRFKEST PTVVAKAPSPKKQVEQAKGLQRSDSATPIETLEEAARAAASIIAEAETKAVRAAEKVHELEIASILREETESILLFSQQIYDRCKSESIYSFYHTTYSNF CVFCVRPKVPKSCIFLYVAGMQGETIVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10030935 [exp]	0	1
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	1.4	0.9073
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	2.0	0.8940
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	4.6	0.8709
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	11.5	0.8884
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	12.7	0.8517
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10036878 [exp]	25.4	0.8781
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	26.5	0.8666
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	26.7	0.8491
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	29.0	0.8568
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	29.2	0.8196

Compare expression of checked genes

Lus10030935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.