Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18020 374 / 1e-123 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G44190 113 / 4e-27 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT2G20570 102 / 2e-23 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G58080 79 / 3e-15 GARP ARR18 response regulator 18 (.1) AT3G16857 77 / 1e-14 GARP ARR1 response regulator 1 (.1.2) AT4G16110 76 / 2e-14 GARP ARR2 response regulator 2 (.1) AT2G25180 76 / 4e-14 GARP ARR12 response regulator 12 (.1) AT2G01760 73 / 1e-13 GARP ARR14 response regulator 14 (.1) AT5G49240 72 / 1e-13 GARP APRR4 pseudo-response regulator 4 (.1) AT5G24470 73 / 3e-13 APRR5 pseudo-response regulator 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040109 [exp] 984 / 0 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 662 / 0 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10011044 [exp] 620 / 0 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10039883 [exp] 119 / 2e-28 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 99 / 7e-22 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10018649 [exp] 94 / 4e-20 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10006446 [exp] 83 / 1e-16 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 82 / 2e-16 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10037719 [exp] 77 / 1e-14 AT3G16857 613 / 0.0 response regulator 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146200 [exp] 650 / 0 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 619 / 0 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.017G015800 [exp] 98 / 1e-21 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.007G136901 [exp] 96 / 6e-21 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.008G135500 [exp] 79 / 4e-15 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 78 / 6e-15 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.006G188000 [exp] 77 / 1e-14 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 77 / 2e-14 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.008G181000 [exp] 76 / 3e-14 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.018G021300 [exp] 76 / 3e-14 AT2G25180 364 / 2e-117 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030938 pacid=23166826 polypeptide=Lus10030938 locus=Lus10030938.g ID=Lus10030938.BGIv1.0 annot-version=v1.0 ATGGTTTGCACTGCTAATGATTTGTCAGAATGGAAGGACTTCCCAAAGGGTCTTAGTGTCCTCCTTCTGGATGAGGACAGCAATTCAGCTGCTGAGATAA AATCAAAACTTGAGGCCATGGACTATACTGTTTCTACTTTCTGCAAGGAGGAGGAAGCTTTATCTGCATTCTCAGACAAACCTGAAAGCTTCCATGCTGC TGTAGTTGAGGTAACTGTAGGTGATGGCAACAGGAGCTTTAAGTTTCTTGAAAATGCTAAGGATTTGCCTATTATTATGATTTCAAACGTTAATTGCCTT AGCACGATGATGAAATGTATGGCGCTAGGGGCAATGGAGTTCCTTCTTAAACCGCTCTCTGAAGATAAGCTAAGGAATCTATGGCAGCATGTAGTTCACA AGGCCTTTAATGCAGGATCAAGTGTGCAATCCGAACCAATGAAGCCTGTAAAAGATTCAGTAGTCTCCATGTCGGAGATCAAAAAAGAGATTGAGGTTAT GGATAATGGAAATTCAGATGAAACGGAGGAAGTATCTCCTGCTGATGACACTATTGGTCAGTCTTCTGATAGTGATAAGTACCCGGCTCCTTCAACTCCT CAACTGAAACAAGGCCAACGGTTATTAGATGATGTGGATTGTCAAGACCATACTCACTGTTCGACAGAAAAAGAAAGTGCTGAGCAGGAGGGGGAGTCTA AATCTGTCGAAACTTCATTTACAATGGCTGAAATAAGTGTACAGGTCGATACTGGGAACTTAACCGATAGTAAAATCAAAGAGGATGATGACTTGACCAG TGGTTCCAACATTGATCTTCAAAATAGCCAGAACAATTCCAACGGTGGTGCCGAAGACGGATCGAAAGCTTCTTGTCTTAATACTTCTGGAGTTACTAAA GCTAACCGGAAGAAAACGAAGGTAGATTGGACTTCTGACCTGCACAGAAATTTTGTGAAGGCTGTGGAGCAATTAGGTGTAGATCAAGCGATTCCCTCGA AAATACTGGAGCTTATGAAAGTTGAGGGCTTGACTAGGCATAACATAGCTAGCCATCTTCAGTACCACTTTGCTTCTCAAGGCTTGATTGTGCTTCAGTA TCAGGTAAATATTAGTCTTATGGAGTTATCTCTGAAGCAGAAATATAGAATGCACAGGAGACACATTTTACCTAAAGAAGATGAGCGGAGGTGGCCACAA CAACACAAAGATGGAACAAAACGGAGTTACTATCTACAGAAACCTATTATTGCCTACCCTCCTCCTTATCACCAACAACAACACTCAACTCATGCTACTT TCCCACCCAACTATGTCCATCCCATGTGGGGAGCAGCAACTGGTAATCACCCACCACCTGGAGTACAGATGTGGAGTCCTCCTGGATATTCCCCATGGCC ATCATTTCCAACGTTGCATGCTGATGCATGGGGTTGCCCTGTGATGCCACAGCCACAATTGCCTTATCCTTGCTTGCCTCAAAATCAACCCGGGTATCAT GGTGTCGCCTTGGCCGGGTATCATGGTGTCGCCTTGGCTGACAACCACTGCACTATGTCACAAAATCCATTTAACTTTCAGCCGGCAGAGGAAGTGATTG ACAAAGTAGTGAAAGAAGCCATCAATGAACCATGGCTGCCATTACCAATAGGCCTAAAGCCTCCTTCCATTGACAGTGTAGTAGCTGAACTGTGCAGGCA AGGCATCTCTGCCGTTCCTCCTCACATCCATGGCTCTAATTCATCTTGA
AA sequence Show only first row Show all	>Lus10030938 pacid=23166826 polypeptide=Lus10030938 locus=Lus10030938.g ID=Lus10030938.BGIv1.0 annot-version=v1.0 MVCTANDLSEWKDFPKGLSVLLLDEDSNSAAEIKSKLEAMDYTVSTFCKEEEALSAFSDKPESFHAAVVEVTVGDGNRSFKFLENAKDLPIIMISNVNCL STMMKCMALGAMEFLLKPLSEDKLRNLWQHVVHKAFNAGSSVQSEPMKPVKDSVVSMSEIKKEIEVMDNGNSDETEEVSPADDTIGQSSDSDKYPAPSTP QLKQGQRLLDDVDCQDHTHCSTEKESAEQEGESKSVETSFTMAEISVQVDTGNLTDSKIKEDDDLTSGSNIDLQNSQNNSNGGAEDGSKASCLNTSGVTK ANRKKTKVDWTSDLHRNFVKAVEQLGVDQAIPSKILELMKVEGLTRHNIASHLQYHFASQGLIVLQYQVNISLMELSLKQKYRMHRRHILPKEDERRWPQ QHKDGTKRSYYLQKPIIAYPPPYHQQQHSTHATFPPNYVHPMWGAATGNHPPPGVQMWSPPGYSPWPSFPTLHADAWGCPVMPQPQLPYPCLPQNQPGYH GVALAGYHGVALADNHCTMSQNPFNFQPAEEVIDKVVKEAINEPWLPLPIGLKPPSIDSVVAELCRQGISAVPPHIHGSNSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10030938 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	11.4	0.6917
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	17.1	0.6395
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	18.1	0.6501
AT1G71140			MATE efflux family protein (.1...		Lus10006171 [exp]	23.0	0.5924
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10018467 [exp]	23.7	0.6217
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	38.5	0.6137
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	39.9	0.6040
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	40.9	0.6233
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	43.5	0.5992
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	45.6	0.5778

Compare expression of checked genes

Lus10030938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.