Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32240 202 / 6e-61 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT5G16560 142 / 3e-38 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT4G17695 140 / 3e-38 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT5G42630 130 / 4e-35 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT2G38300 94 / 5e-21 GARP myb-like HTH transcriptional regulator family protein (.1) AT1G14600 87 / 3e-19 GARP Homeodomain-like superfamily protein (.1) AT2G02060 87 / 4e-19 GARP Homeodomain-like superfamily protein (.1) AT2G40260 86 / 5e-18 GARP Homeodomain-like superfamily protein (.1) AT4G04580 81 / 8e-18 GARP Homeodomain-like superfamily protein (.1) AT5G45580 82 / 2e-17 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035387 [exp] 290 / 2e-97 AT1G32240 222 / 1e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10032746 [exp] 133 / 4e-35 AT5G42630 194 / 3e-60 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10011660 [exp] 113 / 2e-28 AT5G42630 138 / 2e-39 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10035386 [exp] 92 / 3e-21 AT1G32240 71 / 1e-14 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10029225 [exp] 87 / 1e-19 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10002207 [exp] 89 / 2e-19 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 89 / 2e-19 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10012239 [exp] 88 / 5e-19 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 86 / 3e-18 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096300 [exp] 239 / 6e-75 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.001G137600 [exp] 214 / 2e-65 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.017G137600 [exp] 143 / 7e-38 AT5G16560 256 / 8e-81 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.004G082400 [exp] 143 / 1e-37 AT5G16560 233 / 7e-72 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.012G042100 [exp] 134 / 6e-35 AT5G16560 193 / 6e-57 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.002G130200 [exp] 131 / 2e-34 AT5G42630 199 / 6e-62 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.015G031600 [exp] 132 / 6e-34 AT5G16560 176 / 1e-50 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.014G037200 [exp] 129 / 7e-34 AT5G42630 209 / 6e-66 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.009G075100 [exp] 99 / 5e-23 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.011G006350 [exp] 91 / 2e-20 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030989 pacid=23166724 polypeptide=Lus10030989 locus=Lus10030989.g ID=Lus10030989.BGIv1.0 annot-version=v1.0 ATGGAGTTGTTCCCAGCTCAGCCGGATTTGTCTCTGCAAATCAGCCTCCCCAACACCAAACCCACCTCCTCCACGTGGCGCCGGACCTCCGATGAAGACG CCGATGATAGTCCTTTGGGTGGTTTCTGGAAAAGAGCCCTCGACTCCCGCAGCACCAACACCACCACCGCCGTCACAACAACCACCACCACCACCACCAC CGGAGGATCCTCCTCTTTTGACCTGTCCTTGTCAAATCCTTCCTCCTCCGCTGCCGCCATTAACAACCCACACTACTATCCTCCCAACCACCACCACTTC AACAATGGAAGTAGTAGTAATGTCACCAATTTCTTCCGATCCGGCGGCCCTAATTTCCAACAGCATCTTCATCCTCATCACCAGCAGTACTACCACCAAC ATCATCAGTACCCAGCAACGGCGGTGGAGGAGATGGGGTACTTGAGACCCATCAAAGGGATCCCACTTTACCAAAACCCTCCTCCTCCTTCTAATTCCTT CTCTCCAAACATCCACCACCACCAGCAGCTTCATCCTTCTATGGATACGATTAACGCCTTGGCCAGCGGCGGCGGGGGAAGGGGGTTTATGGGACAACAA CAACACCAACATCAGCCATCATCGACGTCTTCATCTTCGTTGATGATGATGAGATCGAGTACGAGGTTCATGTCGAGATTCCCAGGAAAGAGAAGCATGA GAGCTCCGAGGATGCGGTGGACTACTACCCTCCACGCCCGCTTTGTCCACGCCGTCGAGCTCTTAGGCGGCCATGAAAGAGCAACTCCCAAGTCGGTACT GGAGCTCATGGATGTCAAGGATCTAACTTTGGCTCATGTCAAATCCCATTTGCAGATGTACCGCACGGTAAAAACCACTGACAGAGCTGCTGCCACGTCA GGGCAATCAGATTTAGTTGACAACGGGTCGTCAGGAGATAACTCTGAAGATTTGATGCTGGACATTCACAACACGTCGTCGTCTTCATCGAGGCGGCCGC CGCCAGAACCATGCTCGATGATGCAGCAGCAGCAGCAACAACAACAACAAGGAATAAGAACACCATCATCAATTGGTCACCACCATTCTCTGTGGAGCAA TTCTTCGAGGGAAGCTTGGTTGCATGGAAAAACAAAGGACCCTCCTGCAACTTTGACATCTCTTGAGCAGAAGGAAATGGATCCAAAGTGCATGAGCTAT GAGAGAATATCAGATGGAAGCTGTTCATCAAGTCAGCTTTCAGGGTCAAGAAGTCCCCAGAGACCAAATTTGGAGTTCACTTTGGGCAGGCCACTTTGA
AA sequence Show only first row Show all	>Lus10030989 pacid=23166724 polypeptide=Lus10030989 locus=Lus10030989.g ID=Lus10030989.BGIv1.0 annot-version=v1.0 MELFPAQPDLSLQISLPNTKPTSSTWRRTSDEDADDSPLGGFWKRALDSRSTNTTTAVTTTTTTTTTGGSSSFDLSLSNPSSSAAAINNPHYYPPNHHHF NNGSSSNVTNFFRSGGPNFQQHLHPHHQQYYHQHHQYPATAVEEMGYLRPIKGIPLYQNPPPPSNSFSPNIHHHQQLHPSMDTINALASGGGGRGFMGQQ QHQHQPSSTSSSSLMMMRSSTRFMSRFPGKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAATS GQSDLVDNGSSGDNSEDLMLDIHNTSSSSSRRPPPEPCSMMQQQQQQQQQGIRTPSSIGHHHSLWSNSSREAWLHGKTKDPPATLTSLEQKEMDPKCMSY ERISDGSCSSSQLSGSRSPQRPNLEFTLGRPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	0	1
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	1.4	0.9457
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	1.7	0.8651
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	2.0	0.9337
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	3.7	0.8269
AT4G28100			unknown protein		Lus10018524 [exp]	5.3	0.8617
AT5G52420			unknown protein		Lus10039249 [exp]	7.4	0.8092
AT5G02440			unknown protein		Lus10023770 [exp]	8.8	0.8063
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	10.7	0.8285
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	11.5	0.8075
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	12.6	0.8590

Compare expression of checked genes

Lus10030989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.