Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 409 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 399 / 1e-140 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 397 / 7e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 320 / 2e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 300 / 1e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 240 / 6e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 229 / 2e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 202 / 6e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 115 / 6e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 104 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035479 [exp] 595 / 0 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 594 / 0 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 451 / 5e-161 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 450 / 8e-161 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 434 / 3e-154 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 420 / 7e-149 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 416 / 3e-147 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 416 / 3e-147 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 403 / 3e-142 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 420 / 6e-149 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 387 / 9e-136 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 385 / 4e-135 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 367 / 3e-128 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 362 / 2e-125 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 345 / 3e-119 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 317 / 3e-108 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 237 / 1e-76 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 224 / 7e-72 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 224 / 7e-72 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031100 pacid=23166727 polypeptide=Lus10031100 locus=Lus10031100.g ID=Lus10031100.BGIv1.0 annot-version=v1.0 ATGTGGATCTTTGGGTGGAAAGGACCAAGTGGTTTCTCAGCTCGCTCCACTGCTGAGGAAGTTACTCAAGGAATCGACGCTACTGGCCTCACCGCCATCG TTACAGGAGCTACTAGTGGAATTGGAGTGGATACAGCAAGAGTGCTGGCTCTCAGGGGAGCTCATGTTGTTATGGCCGTCAGAAATGTAGAAGCTGGCAA TGAACTAAAACAATCCATCCTCAAGGAAACCCCTGCTGCTAAGATTGATGTCATGCACTTGAATCTCAGTTCCATGGCTTCCGTCAGGAAATTCGCTTCT CAATACATCTCTTCCGCCCTTCCACTCAACATTCTCATTAACAATGCAGGCATCATGGCGCCTCCTTTCACTCTTTCACCGGATAACATCGAGCTCCAGT TTGCAACTAACCATATTGGGCATTTCCTTCTGACGCATCTTCTGCTGGACACGATGAAGAAGACAGCTCGTGAGAGCAATCGAGAGGGGAGGATTGTGAA TGTATCATCTGGAGGCCACCAATTCGCCTATGCAGAAGGCATTCGATTCGACAAGATCAACAACGAAGCGGAGTACAACTGCTACCGTGCTTATGGAGAA GAAGGGGTGAACATAACTGCTAATTCACTTCATCCCGGTGAGATTGCTACCAACCTTGCTCGGGATAATGGCCTTCTTAATGCTATTTCCAACAGCTTTA TTAAGTACTTCCTCAAAACCACAAGCCAGGGAGCAGCAACTCAACTATATGTGGCTCTGCACCCACAAGTGGAAGGGGTATCTGGGGAATACTTCAATCA CAACAACATATCCAAACCAGGAACTGCTCCTGCTCAAGATGAAGTGTTGGCCAAAAAGCTGTGGGATTTCACCATGGACATCATCACTACTTAG
AA sequence Show only first row Show all	>Lus10031100 pacid=23166727 polypeptide=Lus10031100 locus=Lus10031100.g ID=Lus10031100.BGIv1.0 annot-version=v1.0 MWIFGWKGPSGFSARSTAEEVTQGIDATGLTAIVTGATSGIGVDTARVLALRGAHVVMAVRNVEAGNELKQSILKETPAAKIDVMHLNLSSMASVRKFAS QYISSALPLNILINNAGIMAPPFTLSPDNIELQFATNHIGHFLLTHLLLDTMKKTARESNREGRIVNVSSGGHQFAYAEGIRFDKINNEAEYNCYRAYGE EGVNITANSLHPGEIATNLARDNGLLNAISNSFIKYFLKTTSQGAATQLYVALHPQVEGVSGEYFNHNNISKPGTAPAQDEVLAKKLWDFTMDIITT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	0	1
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	2.4	0.9899
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	3.2	0.9869
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	3.9	0.9914
					Lus10015339 [exp]	4.2	0.9870
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	7.3	0.9889
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	8.0	0.9852
AT3G62650			unknown protein		Lus10017613 [exp]	8.5	0.9845
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	9.5	0.9880
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	9.8	0.9884
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10016601 [exp]	10.2	0.9685

Compare expression of checked genes

Lus10031100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.